Publications

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Metagenome

Community Science Program

Mason, C. N. et al. (2023) Taxonomic and functional restoration of tallgrass prairie soil microbial communities in comparison to remnant and agricultural soils. FEMS Microbiology Ecology. 10.1093/femsec/fiad120

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Genomic Technologies

Malmstrom, R. R. et al. (2023) Quality MAGnified. Nature Reviews Microbiology. 10.1038/s41579-023-00981-4

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Metagenome

Community Science Program

Sims, K. W. et al. (2023) The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Continental Hydrothermal Systems. Geochimica et Cosmochimica Acta. 10.1016/j.gca.2023.10.021

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Metagenome

Microbial

Community Science Program

Bunbury, F. et al. (2023) Shedding light on spatial structure and dynamics in phototrophic biofilms. Current Opinion in Systems Biology. 10.1016/j.coisb.2023.100480

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Metagenome

Community Science Program

EMSL FICUS

Sieradzki, E. T. et al. (2023) Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development. mSystems. 10.1128/msystems.00315-23

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Fungal & Algal

Community Science Program

Leng, Y. et al. (2023) A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat. PhytoFrontiers™. 10.1094/phytofr-08-23-0108-a

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Genomic Technologies

Microbial

EMSL FICUS

Murali, R. et al. (2023) Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea. PLOS Biology. 10.1371/journal.pbio.3002292

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Genomic Technologies

Ho, H. et al. (2023) Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning. PeerJ. 10.7717/peerj.16129

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Metagenome

Microbial

Viral

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Bioenergy Research Centers

Community Science Program

ETOP

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

BER Support Science

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

BER Support Science

Community Science Program

Bioenergy Research Centers

Community Science Program

Bioenergy Research Centers

Director's Science, R&D, and Work For Others

Community Science Program

EMSL FICUS

Camargo, A. et al. (2023) Identification of mobile genetic elements with geNomad. Nature Biotechnology. 10.1038/s41587-023-01953-y

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Metagenome

Microbial

Viral

Camargo, A. et al. (2023) Fast and accurate identification of plasmids and viruses in sequencing data using geNomad. Nature Biotechnology. 10.1038/s41587-023-01982-7

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Genomic Technologies

Plant

Community Science Program

Bhaskara, G. B. et al. (2023) Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants. Molecular Biology and Evolution. 10.1093/molbev/msad210

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DNA Synthesis

Community Science Program

Tian, J. et al. (2023) Custom tuning of Rieske oxygenase reactivity. Nature Communications. 10.1038/s41467-023-41428-x

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