Our data platforms are a key resource for the broader scientific community and require constant developments to meet the ever-changing demands of our users.
Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers.
The JGI Genome Portal provides unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace the Genome Portal.
GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.
The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated context. IMG/M provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system.
IMG/PR is a plasmid genome resource featuring the largest collection of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information.
The IMG/VR database offers the largest publicly available collection of Uncultivated Viral Genomes, derived from genomes, metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and microbial host predictions.
The Mycocosm web portal provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and genome-centric analyses of fungi and community annotation.
Phycocosm is a comprehensive resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows users to navigate these genomes and conduct comparative and genome-centric analyses of algae, while also encouraging community engagement and data exchange.
Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the modern descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.
The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene clusters (BGCs) across all kingdoms of life. Tools are provided to display annotation data from many common software tools, and from many users, so that the data is dynamic and ever-improving, and to facilitate discussion and debate about the data. It is also a place where the community can upload new data for use by scientists and the public, and provide programmatic access to all sequence and annotation data and their comments.
