Publications

Roux, S. et al. (2023) Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1038/s41396-023-01468-z

Harwood, T. V. et al. (2023) BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports. 10.1038/s41598-023-40496-9

Davidson, R. B. et al. (2023) Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. Bioinformatics. 10.1093/bioinformatics/btad511

Chiu, B. K. et al. (2023) Membrane lipid and expression responses of Saccharolobus islandicus REY15A to acid and cold stress. Frontiers in Microbiology. 10.3389/fmicb.2023.1219779

Shi, Z. J. et al. (2023) Maast: genotyping thousands of microbial strains efficiently. Genome Biology. 10.1186/s13059-023-03030-8

White, C. et al. (2023) Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios. Frontiers in Microbiology. 10.3389/fmicb.2023.1243410

Zhao, Y. et al. (2023) Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.. Molecular Plant-Microbe Interactions. 10.1094/mpmi-07-23-0091-r

Sahu, N. et al. (2023) Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria. Nature Microbiology. 10.1038/s41564-023-01448-1

Zhong, Z. et al. (2023) Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines. Microbiome. 10.1186/s40168-023-01619-6

Sreedasyam, A. et al. (2023) JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Research. 10.1093/nar/gkad616

de Oliveira, C. M. et al. (2023) Trichoderma harzianum transcriptome in response to the nematode Pratylenchus brachyurus. Biological Control. 10.1016/j.biocontrol.2023.105245

Honeker, L. K. et al. (2023) Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest. Nature Microbiology. 10.1038/s41564-023-01432-9