Publications

Baltsavia, I. et al. (2025) MjCyc: Rediscovering the pathway-genome landscape of the first sequenced archaeon, Methanocaldococcus (Methanococcus) jannaschii. iScience. 10.1016/j.isci.2024.111546

Chau, S. et al. (2025) Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics. Current Bioinformatics. 10.2174/0115748936299440240709070105

Barnes, E. M. et al. (2025) Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome. Phytobiomes Journal. 10.1094/pbiomes-08-24-0080-r

Butkovich, L. V. et al. (2024) Separation of life stages within anaerobic fungi (Neocallimastigomycota) highlights differences in global transcription and metabolism. Fungal Genetics and Biology. 10.1016/j.fgb.2024.103958

Tobin, E. E. et al. (2024) Omics-driven onboarding of the carotenoid producing red yeast Xanthophyllomyces dendrorhous CBS 6938. Applied Microbiology and Biotechnology. 10.1007/s00253-024-13379-w

Anderson, S. R. et al. (2024) A One‐Pot Biocatalytic Cascade to Access Diverse l‐Phenylalanine Derivatives from Aldehydes or Carboxylic Acids. ChemCatChem. 10.1002/cctc.202401979

Estrada-Graf, A. et al. (2024) Genome assembly and annotation of microalga Nannochloropsis oceanica C018.. Microbiology Resource Announcements. 10.1128/mra.00883-24

Payne, P. E. et al. (2024) Uncovering novel functions of the enigmatic, abundant, and active Anaerolineae in a salt marsh ecosystem.. mSystems. 10.1128/msystems.01162-24

Mutz, P. et al. (2024) The protein structurome of Orthornavirae and its dark matter.. mBio. 10.1128/mbio.03200-24

Sharma, B. D. et al. (2024) Pyrophosphate-free glycolysis in Clostridium thermocellum increases both thermodynamic driving force and ethanol titers. Biotechnology for Biofuels and Bioproducts. 10.1186/s13068-024-02591-5

Contarini, P. et al. (2024) A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum. Frontiers in Microbiology. 10.3389/fmicb.2024.1491485

Weintraub, S. J. et al. (2024) Oleaginous Yeast Biology Elucidated With Comparative Transcriptomics. Biotechnology and Bioengineering. 10.1002/bit.28891