Publications

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Genomic Technologies

Microbial

EMSL FICUS

Murali, R. et al. (2023) Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea. PLOS Biology. 10.1371/journal.pbio.3002292

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Genomic Technologies

Ho, H. et al. (2023) Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning. PeerJ. 10.7717/peerj.16129

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Metagenome

Microbial

Viral

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Bioenergy Research Centers

Community Science Program

ETOP

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

BER Support Science

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

Director's Science, R&D, and Work For Others

Community Science Program

BER Support Science

Community Science Program

Bioenergy Research Centers

Community Science Program

Bioenergy Research Centers

Director's Science, R&D, and Work For Others

Community Science Program

EMSL FICUS

Camargo, A. et al. (2023) Identification of mobile genetic elements with geNomad. Nature Biotechnology. 10.1038/s41587-023-01953-y

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Metagenome

Microbial

Viral

Camargo, A. et al. (2023) Fast and accurate identification of plasmids and viruses in sequencing data using geNomad. Nature Biotechnology. 10.1038/s41587-023-01982-7

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Genomic Technologies

Plant

Community Science Program

Bhaskara, G. B. et al. (2023) Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants. Molecular Biology and Evolution. 10.1093/molbev/msad210

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DNA Synthesis

Community Science Program

Tian, J. et al. (2023) Custom tuning of Rieske oxygenase reactivity. Nature Communications. 10.1038/s41467-023-41428-x

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Fungal & Algal

Genomic Technologies

Community Science Program

Longley, R. et al. (2023) Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi. Communications Biology. 10.1038/s42003-023-05299-8

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Fungal & Algal

Genomic Technologies

Community Science Program

Amses, K. R. et al. (2023) Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi. Fungal Genetics and Biology. 10.1016/j.fgb.2023.103838

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Genomic Technologies

Microbial

Community Science Program

Robertson, R. et al. (2023) Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908. Microbiology Resource Announcements. 10.1128/mra.00548-23

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Microbial

Director's Science, R&D, and Work For Others

Ionescu, D. et al. (2023) Genomic Mysteries of Giant Bacteria: Insights and Implications. Genome Biology and Evolution. 10.1093/gbe/evad163

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Microbial

Bioenergy Research Centers

Olson, D. G. et al. (2023) Ethanol tolerance in engineered strains of Clostridium thermocellum. Biotechnology for Biofuels and Bioproducts. 10.1186/s13068-023-02379-z

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Microbial

Community Science Program

Mayali, X. et al. (2023) Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum. Nature Communications. 10.1038/s41467-023-41179-9

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