Publications

Khachaturyan, M. et al. (2023) Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant. Genome Biology and Evolution. 10.1093/gbe/evad167

Kieft, B. et al. (2023) Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater. Nature Communications. 10.1038/s41467-023-40907-5

Bowers, R. M. et al. (2023) Gone with a trace: cataloguing the disappearing gut microbes. Nature Reviews Microbiology. 10.1038/s41579-023-00968-1

Takawira, L. T. et al. (2023) Functional investigation of five R2R3-MYB transcription factors associated with wood development in Eucalyptus using DAP-seq-ML. Plant Molecular Biology. 10.1007/s11103-023-01376-y

Villalobos-Escobedo, J. M. et al. (2023) Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites. PLOS Genetics. 10.1371/journal.pgen.1010909

Simirenko, L. et al. (2023) gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. Frontiers in Bioengineering and Biotechnology. 10.3389/fbioe.2023.1217811

Lee, S. H. et al. (2023) Identification of 2‑Hydroxyacyl-CoA Synthases with High Acyloin Condensation Activity for Orthogonal One-Carbon Bioconversion. ACS Catalysis. 10.1021/acscatal.3c02373

Caddell, D. et al. (2023) Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid. Phytobiomes Journal. 10.1094/pbiomes-02-23-0011-r

Vik, D. R. et al. (2023) MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets. ISME Communications. 10.1038/s43705-023-00295-9

Pavia, M. J. et al. (2023) BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes. Microbiome. 10.1186/s40168-023-01625-8

Li, J. et al. (2023) Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of Fungi. 10.3390/jof9080860

Zhao, J. et al. (2023) Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1038/s41396-023-01493-y