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… The JGI’s DNA Synthesis Program supports a wide range of projects, … The DNA Synthesis Program plays a central role in advancing … of new biofuels and sustainable biochemicals. The DNA Synthesis Program aims to generate large datasets to … The JGI's DNA Synthesis Science Group supports researchers exploring …

… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

…  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User … User Agreement , JGI User Agreement for Federal Agencies , DNA Synthesis Appendix  and DNA Sequencing Appendix are available for download.)  After …

… Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … colleagues, to quantify heavy isotope incorporation into DNA by active microbial populations (Hungate et al. 2015). … HMM search across all IMG metagenomes, capturing sequence diversity for proteins of interest. …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … research.  These efforts include exploration of the global diversity of alternative genetic codes (Science 2014), … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …

… The DNA Synthesis Science User Advisory Committee is chartered …

… elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … processes. This research provides insights into microbial diversity and metabolic potential, with implications for … functions that shape ecosystems. By decoding the microbial DNA in natural environments, the Program provides a snapshot …

… provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … annotation (single organism). Note: smRNA sequencing is no longer supported. For annotation: de novo assembly. For …

… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … the globe to identify genes to improve our domesticated species.  The program supports the development of … for key plant species, enhancing our understanding of plant diversity and integrating various data types to explore the …

… and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with activity … metatranscriptomics provide invaluable information on virus diversity and activity in microbial communities, however …

… able to produce chemistry that deals with reactive oxygen species and so potentially could go down that route.  DAN: … local environments, and so they don’t transfer a lot of DNA back and forth, especially across species. And so then … And so we’ve been working with metals and in particular rare earth elements or Rare Earth metals with our cultures.  …