2009 Pubs - DOE Joint Genome Institute

Aklujkar, M. et al. (2009) The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens. BMC Microbiol 9, 109. 10.1186/1471-2180-9-109
Allen, M. A. et al. (2009) The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J 3(9), 1012-35. 10.1038/ismej.2009.45
Anderson, I. et al. (2009) Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Stand Genomic Sci 1(3), 218-25. 10.4056/sigs.31864
Anderson, I. et al. (2009) Genomic characterization of methanomicrobiales reveals three classes of methanogens. PLoS One 4(6), e5797. 10.1371/journal.pone.0005797
Anderson, I. et al. (2009) Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)). Standards in Genomic Sciences 1(3), 218-225. Doi 10.4056/Sigs.31864
Anderson, I. J. et al. (2009) The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. Bmc Genomics 10. Artn 145 Doi 10.1186/1471-2164-10-145
Anderson, I. J. et al. (2009) Complete genome sequence of Methanocorpusculum labreanum type strain Z. Stand Genomic Sci 1(2), 197-203. 10.4056/sigs.35575
Anderson, I. J. et al. (2009) Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1. Stand Genomic Sci 1(2), 189-96. 10.4056/sigs.32535
Anderson, I. J. et al. (2009) Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1. Stand Genomic Sci 1(2), 183-8. 10.4056/sigs.30527
Baker, S. E. et al. (2009) Selection to sequence: opportunities in fungal genomics. Environ Microbiol 11(12), 2955-8. 10.1111/j.1462-2920.2009.02112.x
Barabote, R. D. et al. (2009) Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Research 19(6), 1033-1043. DOI 10.1101/gr.084848.108
Bickel, R. D. et al. (2009) Contrasting Patterns of Sequence Evolution at the Functionally Redundant bric A brac Paralogs in Drosophila melanogaster. Journal of Molecular Evolution 69(2), 194-202. DOI 10.1007/s00239-009-9265-y
Blazewicz, J. et al. (2009) Whole genome assembly from 454 sequencing output via modified DNA graph concept. Computational Biology and Chemistry 33(3), 224-230. DOI 10.1016/j.compbiolchem.2009.04.005
Bressler, J. et al. (2009) The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts. BMC Med Genet 10, 56. 10.1186/1471-2350-10-56
Calton, M. A. et al. (2009) Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case-control study. Human Molecular Genetics 18(6), 1140-1147. Doi 10.1093/Hmg/Ddn431
Campbell, B. J. et al. (2009) Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet 5(2), e1000362. 10.1371/journal.pgen.1000362
Carbon, S. et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25(2), 288-9. 10.1093/bioinformatics/btn615
Chain, P. S. et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326(5950), 236-7. 10.1126/science.1180614
Chain, P. S. et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326(5950), 236-7. 10.1126/science.1180614
Chovatia, M. et al. (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T)). Standards in Genomic Sciences 1(3), 254-261. Doi 10.4056/Sigs.40645
Chovatia, M. et al. (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci 1(3), 254-61. 10.4056/sigs.40645
Chun, J. et al. (2009) Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of Sciences of the United States of America 106(36), 15442-15447. DOI 10.1073/pnas.0907787106
Clum, A. et al. (2009) Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). Standards in Genomic Sciences 1(1), 38-45. Doi 10.4056/Sigs.1463
Clum, A. et al. (2009) Complete genome sequence of Pirellula staleyi type strain (ATCC 27377(T)). Standards in Genomic Sciences 1(3), 308-316. Doi 10.4056/Sigs.51657
Coleman, J. J. et al. (2009) The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion. Plos Genetics 5(8). ARTN e1000618 DOI 10.1371/journal.pgen.1000618
Copeland, A. et al. (2009) Complete genome sequence of Catenulispora acidiphila type strain (ID 139908(T)). Standards in Genomic Sciences 1(2), 119-125. Doi 10.4056/Sigs.17259
Copeland, A. et al. (2009) Complete genome sequence of Desulfomicrobium baculatum type strain (X). Stand Genomic Sci 1(1), 29-37. 10.4056/sigs.13134
Cordeddu, V. et al. (2009) Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair. Nat Genet 41(9), 1022-6. 10.1038/ng.425
Donaher, N. et al. (2009) The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. Genome Biol Evol 1, 439-48. 10.1093/gbe/evp047
Drainas, C. et al. (2009) Characterization and whole genome sequencing of Arthrobacter phenanthrenivorans, a new phenanthrene degrading bacterium. Febs Journal 276, 101-101.
Dubchak, I. et al. (2009) Multiple whole-genome alignments without a reference organism. Genome Research 19(4), 682-689. DOI 10.1101/gr.081778.108
Duncan, K. E. et al. (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43(20), 7977-84. 10.1021/es9013932
Duncan, K. E. et al. (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43(20), 7977-84. 10.1021/es9013932
Engelbrektson, A. et al. (2009) Probiotics to minimize the disruption of faecal microbiota in healthy subjects undergoing antibiotic therapy. J Med Microbiol 58(Pt 5), 663-70. 10.1099/jmm.0.47615-0
Field, D. et al. (2009) Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7. Stand Genomic Sci 1(1), 68-71. 10.4056/sigs.25165
Foster, J. T. et al. (2009) Whole-genome-based phylogeny and divergence of the genus Brucella. J Bacteriol 191(8), 2864-70. 10.1128/JB.01581-08
Gray, J. et al. (2009) A recommendation for naming transcription factor proteins in the grasses. Plant Physiol 149(1), 4-6. 10.1104/pp.108.128504
Han, C. et al. (2009) Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 1(3), 226-33. 10.4056/sigs.36635
Han, C. et al. (2009) Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci 1(1), 54-62. 10.4056/sigs.22138
Han, C. et al. (2009) Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 1(3), 226-33. 10.4056/sigs.36635
Harris, D. R. et al. (2009) Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol 191(16), 5240-52. 10.1128/JB.00502-09
Herlemann, D. P. et al. (2009) Genomic analysis of “Elusimicrobium minutum,” the first cultivated representative of the phylum “Elusimicrobia” (formerly termite group 1). Appl Environ Microbiol 75(9), 2841-9. 10.1128/AEM.02698-08
Hill, K. K. et al. (2009) Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol 7, 66. 10.1186/1741-7007-7-66
Hill, K. K. et al. (2009) Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol 7, 66. 10.1186/1741-7007-7-66
Hooper, S. D. et al. (2009) Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach. Nucleic Acids Research 37(7), 2096-2104. Doi 10.1093/Nar/Gkp075
Hooper, S. D. et al. (2009) Microbial co-habitation and lateral gene transfer: what transposases can tell us. Genome Biology 10(4). Artn R45 Doi 10.1186/Gb-2009-10-4-R45
Hugenholtz, P. et al. (2009) Focus: Synergistetes. Environ Microbiol 11(6), 1327-9. 10.1111/j.1462-2920.2009.01949.x
Hugenholtz, P. et al. (2009) A changing of the guard. Environ Microbiol 11(3), 551-3. 10.1111/j.1462-2920.2009.01888.x
Ivanova, N. et al. (2009) Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b(T)). Standards in Genomic Sciences 1(2), 126-132. Doi 10.4056/Sigs.1854
Ivanova, N. et al. (2009) Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Stand Genomic Sci 1(2), 110-8. 10.4056/sigs.16197
Ivanova, N. et al. (2009) Spreading of aqueous solutions of trisiloxanes and conventional surfactants over PTFE AF coated silicone wafers. Langmuir 25(6), 3564-70. 10.1021/la803679y
Jiang, Z. H. et al. (2009) Old can be new again: HAPPY whole genome sequencing, mapping and assembly. International Journal of Biological Sciences 5(4), 298-303.
Kataeva, I. A. et al. (2009) Genome Sequence of the Anaerobic, Thermophilic, and Cellulolytic Bacterium “Anaerocellum thermophilum” DSM 6725. Journal of Bacteriology 191(11), 3760-3761. Doi 10.1128/Jb.00256-09
Kawashima, T. et al. (2009) Domain shuffling and the evolution of vertebrates. Genome Res 19(8), 1393-403. 10.1101/gr.087072.108
Kazakov, A. E. et al. (2009) Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. J Bacteriol 191(1), 52-64. 10.1128/JB.01175-08
Keim, P. et al. (2009) The genome and variation of Bacillus anthracis. Mol Aspects Med 30(6), 397-405. 10.1016/j.mam.2009.08.005
Keim, P. et al. (2009) The genome and variation of Bacillus anthracis. Mol Aspects Med 30(6), 397-405. 10.1016/j.mam.2009.08.005
Kislyuk, A. et al. (2009) Frameshift detection in prokaryotic genomic sequences. Int J Bioinform Res Appl 5(4), 458-77.
Klein, M. G. et al. (2009) Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport. J Mol Biol 392(2), 319-33. 10.1016/j.jmb.2009.03.056
Kouvelis, V. N. et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191(22), 7140-1. 10.1128/JB.01084-09
Kouvelis, V. N. et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191(22), 7140-1. 10.1128/JB.01084-09
Kristiansson, E. et al. (2009) ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25(20), 2737-8. 10.1093/bioinformatics/btp508
Kyrpides, N. C. et al. (2009) Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat Biotechnol 27(7), 627-32. 10.1038/nbt.1552
Labutti, K. et al. (2009) Complete genome sequence of Anaerococcus prevotii type strain (PC1). Stand Genomic Sci 1(2), 159-65. 10.4056/sigs.24194
Land, M. et al. (2009) Complete genome sequence of Actinosynnema mirum type strain (101(T)). Standards in Genomic Sciences 1(1), 46-53. Doi 10.4056/Sigs.21137
Land, M. et al. (2009) Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 1(1), 21-8. 10.4056/sigs.1162
Land, M. et al. (2009) Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 1(1), 21-8. 10.4056/sigs.1162
Lane, T. W. et al. (2009) Digital Transcriptomic Analysis of Silicate Starvation Induced Triacylglycerol Formation in the Marine Diatom Thalassiosira Pseudonana.. Phycologia 48(4), 71-71.
Lang, E. et al. (2009) Complete genome sequence of Dyadobacter fermentans type strain (NS114). Stand Genomic Sci 1(2), 133-40. 10.4056/sigs.19262
Lapidus, A. et al. (2009) Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Stand Genomic Sci 1(1), 3-11. 10.4056/sigs.492
Larsson, P. et al. (2009) Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. PLoS Pathog 5(6), e1000472. 10.1371/journal.ppat.1000472
Lauro, F. M. et al. (2009) The genomic basis of trophic strategy in marine bacteria. Proceedings of the National Academy of Sciences of the United States of America 106(37), 15527-15533. DOI 10.1073/pnas.0903507106
Le Crom, S. et al. (2009) Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proceedings of the National Academy of Sciences of the United States of America 106(38), 16151-16156. DOI 10.1073/pnas.0905848106
Lin-Jones, J. et al. (2009) Identification and Localization of Myosin Superfamily Members in Fish Retina and Retinal Pigmented Epithelium. Journal of Comparative Neurology 513(2), 209-223. Doi 10.1002/Cne.21958
Malfatti, S. et al. (2009) Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)). Standards in Genomic Sciences 1(2), 150-158. Doi 10.4056/23264
Markowitz, V. M. et al. (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25(17), 2271-8. 10.1093/bioinformatics/btp393
Marlow, H. Q. et al. (2009) Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian. Dev Neurobiol 69(4), 235-54. 10.1002/dneu.20698
Martinez, D. et al. (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci U S A 106(6), 1954-9. 10.1073/pnas.0809575106
Masta, S. E. et al. (2009) Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses. Mol Phylogenet Evol 50(1), 117-28. 10.1016/j.ympev.2008.10.010
Mavromatis, K. et al. (2009) Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One 4(11), e7979. 10.1371/journal.pone.0007979
Mavromatis, K. et al. (2009) Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii. Plos One 4(1). Artn E4192 Doi 10.1371/Journal.Pone.0004192
Mavromatis, K. et al. (2009) Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One 4(1), e4192. 10.1371/journal.pone.0004192
Mavromatis, K. et al. (2009) The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Standards in Genomic Sciences 1(1), 63-67. Doi 10.4056/Sigs.632
Mavromatis, K. et al. (2009) The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Standards in Genomic Sciences 1(1), 63-67. Doi 10.4056/Sigs.632
Mavromatis, K. et al. (2009) Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System. Plos One 4(11). Artn E7979 Doi 10.1371/Journal.Pone.0007979
Mavrommatis, K. et al. (2009) Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Stand Genomic Sci 1(2), 101-9. 10.4056/sigs.15195
Mavrommatis, K. et al. (2009) Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci 1(2), 93-100. 10.4056/sigs.12260
McBride, M. J. et al. (2009) Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol 75(21), 6864-75. 10.1128/AEM.01495-09
McMurdie, P. J. et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11), e1000714. 10.1371/journal.pgen.1000714
McMurdie, P. J. et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11), e1000714. 10.1371/journal.pgen.1000714
Munk, C. et al. (2009) Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.47643
Munk, C. et al. (2009) Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.47643
Nolan, M. et al. (2009) Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 1(3), 300-7. 10.4056/sigs.48727
Nolan, M. et al. (2009) Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 1(3), 283-90. 10.4056/sigs.46736
Nolan, M. et al. (2009) Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 1(3), 300-7. 10.4056/sigs.48727
Nolan, M. et al. (2009) Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 1(3), 283-90. 10.4056/sigs.46736
Novichkov, P. S. et al. (2009) ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res 37(Database issue), D448-54. 10.1093/nar/gkn684
Novichkov, P. S. et al. (2009) Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 191(1), 65-73. 10.1128/JB.01237-08
O’Rourke, J. A. et al. (2009) Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response. BMC Genomics 10, 376. 10.1186/1471-2164-10-376
Paterson, A. H. et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457(7229), 551-6. 10.1038/nature07723
Pati, A. et al. (2009) Complete genome sequence of Saccharomonospora viridis type strain (P101). Stand Genomic Sci 1(2), 141-9. 10.4056/sigs.20263
Pavlopoulos, G. A. et al. (2009) jClust: a clustering and visualization toolbox. Bioinformatics 25(15), 1994-6. 10.1093/bioinformatics/btp330
Pearson, T. et al. (2009) Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol 7, 78. 10.1186/1741-7007-7-78
Pearson, T. et al. (2009) Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol 7, 78. 10.1186/1741-7007-7-78
Penn, K. et al. (2009) Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J 3(10), 1193-203. 10.1038/ismej.2009.58
Penn, K. et al. (2009) Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J 3(10), 1193-203. 10.1038/ismej.2009.58
Perez, G. et al. (2009) Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus. Appl Environ Microbiol 75(5), 1427-36. 10.1128/AEM.01889-08
Pukall, R. et al. (2009) Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Stand Genomic Sci 1(3), 262-9. 10.4056/sigs.41646
Pukall, R. et al. (2009) Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.37633
Pukall, R. et al. (2009) Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Stand Genomic Sci 1(3), 262-9. 10.4056/sigs.41646
Pukall, R. et al. (2009) Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.37633
Ratnere, I. et al. (2009) Obtaining comparative genomic data with the VISTA family of computational tools. Curr Protoc Bioinformatics Chapter 10, Unit 10 6. 10.1002/0471250953.bi1006s26
Romeo, S. et al. (2009) Rare loss-of-function mutations in ANGPTL family members contribute to plasma triglyceride levels in humans. J Clin Invest 119(1), 70-9. 10.1172/JCI37118
Salinero, K. K. et al. (2009) Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation. Bmc Genomics 10. Artn 351 Doi 10.1186/1471-2164-10-351
Saunders, E. et al. (2009) Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Stand Genomic Sci 1(2), 174-82. 10.4056/sigs.33592
Schubbe, S. et al. (2009) Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. Appl Environ Microbiol 75(14), 4835-52. 10.1128/AEM.02874-08
Seidl, V. et al. (2009) Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey. Bmc Genomics 10. Artn 567 Doi 10.1186/1471-2164-10-567
Seidl, V. et al. (2009) Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey. BMC Genomics 10, 567. 10.1186/1471-2164-10-567
Silby, M. W. et al. (2009) Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol 10(5), R51. 10.1186/gb-2009-10-5-r51
Sims, D. et al. (2009) Complete genome sequence of Kytococcus sedentarius type strain (541). Stand Genomic Sci 1(1), 12-20. 10.4056/sigs.761
Slavotinek, A. M. et al. (2009) Sequence variants in the HLX gene at chromosome 1q41-1q42 in patients with diaphragmatic hernia. Clinical Genetics 75(5), 429-439. DOI 10.1111/j.1399-0004.2009.01182.x
Spring, S. et al. (2009) Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575(T)). Standards in Genomic Sciences 1(3), 242-252. Doi 10.4056/Sigs.39508
Spring, S. et al. (2009) Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Stand Genomic Sci 1(3), 242-53. 10.4056/sigs.39508
Tindall, B. J. et al. (2009) Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Stand Genomic Sci 1(3), 270-7. 10.4056/sigs.42644
Tindall, B. J. et al. (2009) Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Stand Genomic Sci 1(3), 270-7. 10.4056/sigs.42644
Toronto International Data Release Workshop, Authors et al. (2009) Prepublication data sharing. Nature 461(7261), 168-70. 10.1038/461168a
Tschop, M. H. et al. (2009) Getting to the core of the gut microbiome. Nat Biotechnol 27(4), 344-6. 10.1038/nbt0409-344
Van der Auwera, G. A. et al. (2009) Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids. Antonie Van Leeuwenhoek 96(2), 193-204. 10.1007/s10482-009-9316-9
Visel, A. et al. (2009) Functional autonomy of distant-acting human enhancers. Genomics 93(6), 509-13. 10.1016/j.ygeno.2009.02.002
Visel, A. et al. (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457(7231), 854-8. 10.1038/nature07730
Visel, A. et al. (2009) Genomic views of distant-acting enhancers. Nature 461(7261), 199-205. 10.1038/nature08451
Vogel, C. J. et al. (2009) Brachypodium distachyon: a New Model for Biomass Crops. In Vitro Cellular & Developmental Biology-Animal 45, S6-S6.
Walsh, D. A. et al. (2009) Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones. Science 326(5952), 578-582. DOI 10.1126/science.1175309
Walsh, D. A. et al. (2009) Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326(5952), 578-82. 10.1126/science.1175309
Ward, N. L. et al. (2009) Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils. Applied and Environmental Microbiology 75(7), 2046-2056. Doi 10.1128/Aem.02294-08
Ward, N. L. et al. (2009) Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils. Applied and Environmental Microbiology 75(7), 2046-2056. Doi 10.1128/Aem.02294-08
Warnecke, F. et al. (2009) A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts. Journal of Biotechnology 142(1), 91-95. DOI 10.1016/j.jbiotec.2009.03.022
Wattam, A. R. et al. (2009) Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle. Journal of Bacteriology 191(11), 3569-3579. Doi 10.1128/Jb.01767-08
Worden, A. Z. et al. (2009) Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324(5924), 268-72. 10.1126/science.1167222
Woyke, T. et al. (2009) Assembling the Marine Metagenome, One Cell at a Time. Plos One 4(4). Artn E5299 Doi 10.1371/Journal.Pone.0005299
Wright, J. C. et al. (2009) Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger. Bmc Genomics 10. Artn 61 Doi 10.1186/1471-2164-10-61
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