2021 Pubs - DOE Joint Genome Institute

Acinas, S. G. et al. (2021) Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology 4(1). 10.1038/s42003-021-02112-2
Ahmed, M. A. et al. (2021) Metagenomes, metatranscriptomes, and metagenome-assembled genomes from chesapeake and Delaware bay (USA) water samples. Microbiology Resource Announcements 10(21). 10.1128/MRA.00262-21
Albanese, D. et al. (2021) Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages. Microbiome 9(1), 15. 10.1186/s40168-021-01021-0
Altae-Tran, Han et al. (2021) The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases. Science 374(6563), 57-65. 10.1126/science.abj6856
Altamia, M. A. et al. (2021) Wteredinibacter haidensis sp. Nov., teredinibacter purpureus sp. nov. and teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc bankia setacea (bivalvia: Teredinidae) and emended description of the genus teredinibacter. International Journal of Systematic and Evolutionary Microbiology 71(2), 1-11. 10.1099/ijsem.0.004627
Andreani, Julien et al. (2021) Morphological and Genomic Features of the New Klosneuvirinae Isolate Fadolivirus IHUMI-VV54. Frontiers in Microbiology 12, 719703. 10.3389/fmicb.2021.719703
Andreopoulos, William B et al. (2021) Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes. Nucleic Acids Research 50(3), gkab1115-. 10.1093/nar/gkab1115
Ankita Kothari et al. (2021) Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance. mSystems 6(3), e00537-21. 10.1128/mSystems.00537-21
Arellano-Saab, A. et al. (2021) Three mutations repurpose a plant karrikin receptor to a strigolactone receptor. Proceedings of the National Academy of Sciences of the United States of America 118(30). 10.1073/pnas.2103175118
Avila-Magaña, Viridiana et al. (2021) Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress. Nature Communications 12. 10.1038/s41467-021-25950-4
Bachy, C. et al. (2021) Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts. ISME Journal . 10.1038/s41396-021-00989-9
Banerjee, Deepanwita et al. (2021) Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress. Frontiers in Bioengineering and Biotechnology 9, 766674. 10.3389/fbioe.2021.766674
Bauer, S. et al. (2021) The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold. Plos Pathogens 17(2), 36. 10.1371/journal.ppat.1009223
Baumgart, Leo A. et al. (2021) Persistence and plasticity in bacterial gene regulation. Nature Methods 18(12), 1499-1505. 10.1038/s41592-021-01312-2
Ben Francis, T. et al. (2021) Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom. Isme Journal , 15. 10.1038/s41396-021-00928-8
Berg, M. et al. (2021) Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. Isme Journal , 16. 10.1038/s41396-020-00870-1
Berg, M. et al. (2021) Extreme dimensions — how big (or small) can tailed phages be?. Nature Reviews Microbiology 19(7), 407. 10.1038/s41579-021-00574-z
Boeuf, D. et al. (2021) Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage. Microbiome 9(1). 10.1186/s40168-021-01119-5
Bolduc, Benjamin et al. (2021) iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology. ISME Communications 1(1), 77. 10.1038/s43705-021-00083-3
Bomble, Yannick J. et al. (2021) Editorial: Cell Free Biocatalysis for the Production of Bioproducts. Frontiers in Energy Research 9, 781552. 10.3389/fenrg.2021.781552
Bornowski, N. et al. (2021) Genomic variation within the maize stiff-stalk heterotic germplasm pool. Plant Genome . 10.1002/tpg2.20114
Bowers, Robert M. et al. (2021) Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 16(5), 1337-1347. 10.1038/s41396-021-01178-4
Bowman, E. K. et al. (2021) Sorting for secreted molecule production using a biosensor-in-microdroplet approach. Proceedings of the National Academy of Sciences of the United States of America 118(36). 10.1073/pnas.2106818118
Bowman, J. S. et al. (2021) Whole Community Metatranscriptomes and Lipidomes Reveal Diverse Responses Among Antarctic Phytoplankton to Changing Ice Conditions. Frontiers in Marine Science 8, 14. 10.3389/fmars.2021.593566
Bowsher, A. W. et al. (2021) Seasonal dynamics of core fungi in the switchgrass phyllosphere, and co-occurrence with leaf bacteria. Phytobiomes Journal 5(1), 60-68. 10.1094/PBIOMES-07-20-0051-R
Brisson, V. et al. (2021) Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar. Phytobiomes Journal . 10.1094/pbiomes-06-21-0041-r
Brown, I. et al. (2021) High-quality draft genome sequence of the siderophilic and thermophilic leptolyngbyaceae cyanobacterium JSC-12. Microbiology Resource Announcements 10(25). 10.1128/MRA.00495-21
Brown, Jennifer L. et al. (2021) Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates. Biotechnology for Biofuels and Bioproducts 14(1), 234. 10.1186/s13068-021-02083-w
Bruckbauer, S. T. et al. (2021) Experimental evolution of extremophile resistance to ionizing radiation. Trends in Genetics . 10.1016/j.tig.2021.04.011
Calhoun, S. et al. (2021) A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology. Communications Biology 4(1), 15. 10.1038/s42003-021-01859-y
Call, L. et al. (2021) Illuminating the Virosphere Through Global Metagenomics. Annual Review of Biomedical Data Science 4(1), 369-391. 10.1146/annurev-biodatasci-012221-095114
Carey, S. B. et al. (2021) Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science Advances 7(27). 10.1126/sciadv.abh2488
Carper, D. L. et al. (2021) Cultivating the bacterial microbiota of populus roots. mSystems 6(3). 10.1128/mSystems.01306-20
Carper, Dana L. et al. (2021) Cultivating the Bacterial Microbiota of Populus Roots. mSystems 6(3), e01306-20. 10.1128/msystems.01306-20
Carrell, Alyssa A. et al. (2021) Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 16(4), 1074-1085. 10.1038/s41396-021-01136-0
Chai, Y. N. et al. (2021) High-resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities. Plant Cell and Environment 44(5), 1611-1626. 10.1111/pce.14004
Chang, Y. et al. (2021) Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi. Scientific Reports 11(1), 12. 10.1038/s41598-021-82607-4
Chen, I. A. et al. (2021) The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. Nucleic Acids Res 49(D1), D751-D763. 10.1093/nar/gkaa939
Chen, Y. et al. (2021) Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. Nature Communications 12(1). 10.1038/s41467-021-25678-1
Chiniquy, D. et al. (2021) Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes. Frontiers in Microbiology 12, 17. 10.3389/fmicb.2021.598180
Chou, Alexander et al. (2021) An orthogonal metabolic framework for one-carbon utilization. Nature Metabolism 3(10), 1385-1399. 10.1038/s42255-021-00453-0
Chroumpi, T. et al. (2021) Revisiting a ‘simple’ fungal metabolic pathway reveals redundancy, complexity and diversity. Microbial Biotechnology , 13. 10.1111/1751-7915.13790
Chuckran, P. F. et al. (2021) Rapid response of nitrogen cycling gene transcription to labile carbon amendments in a soil microbial community. mSystems 6(3). 10.1128/mSystems.00161-21
Ciobanu, Doina et al. (2021) A single-cell genomics pipeline for environmental microbial eukaryotes. iScience 24(4), 102290. 10.1016/j.isci.2021.102290
Clum, A. et al. (2021) DOE JGI metagenome workflow. mSystems 6(3). 10.1128/MSYSTEMS.00804-20
Coclet, C. et al. (2021) Global overview and major challenges of host prediction methods for uncultivated phages. Current Opinion in Virology 49, 117-126. 10.1016/j.coviro.2021.05.003
Cohen, N. R. et al. (2021) Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean. Nature Microbiology 6(2), 173-+. 10.1038/s41564-020-00814-7
Cole, B. et al. (2021) Plant single-cell solutions for energy and the environment. Communications Biology 4(1). 10.1038/s42003-021-02477-4
Cole, B. J. et al. (2021) Different threats, same response. Nature Plants 7(5), 544-545. 10.1038/s41477-021-00915-z
Couceiro, J. F. et al. (2021) The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos. Microbiology Resource Announcements 10(34). 10.1128/MRA.00320-21
Crowell, Chase R et al. (2021) The Melampsora americana population on Salix purpurea in the Great Lakes region is highly diverse with a contributory influence of clonality. Phytopathology . 10.1094/phyto-05-21-0201-r
Danko, D. et al. (2021) A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell 184(13), 3376-3393.e17. 10.1016/j.cell.2021.05.002
Dauphin, B. et al. (2021) Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. Environmental Microbiology . 10.1111/1462-2920.15752
De Anda, V. et al. (2021) Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Communications 12(1). 10.1038/s41467-021-22736-6
de Mesquita, Clifton P. Bueno et al. (2021) Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern. Genes 12(10), 1609. 10.3390/genes12101609
de Vries, Lisanne et al. (2021) pHBMT1, a BAHD-family monolignol acyltransferase, mediates lignin acylation in poplar. Plant Physiology 188(2), 1014-1027. 10.1093/plphys/kiab546
del Cerro, C. et al. (2021) Intracellular pathways for lignin catabolism in white-rot fungi. Proceedings of the National Academy of Sciences of the United States of America 118(9), 10. 10.1073/pnas.2017381118
Destan, Ebru et al. (2021) Structural insights into bifunctional thaumarchaeal crotonyl-CoA hydratase and 3-hydroxypropionyl-CoA dehydratase from Nitrosopumilus maritimus. Scientific Reports 11(1), 22849. 10.1038/s41598-021-02180-8
Dierschke, Tom et al. (2021) Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha. eLife 10, e57088. 10.7554/elife.57088
DiMario, R. J. et al. (2021) Kinetic variation in grass phosphoenolpyruvate carboxylases provides opportunity to enhance C-4 photosynthetic efficiency. Plant Journal 105(6), 1677-1688. 10.1111/tpj.15141
Ding, Y. et al. (2021) Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience. Current Opinion in Biotechnology 70, 174-186. 10.1016/j.copbio.2021.05.010
Dutilh, Bas E et al. (2021) Perspective on taxonomic classification of uncultivated viruses. Current Opinion in Virology 51, 207-215. 10.1016/j.coviro.2021.10.011
Dykes, G. E. et al. (2021) Silicon-rich soil amendments impact microbial community composition and the composition of arsM bearing microbes. Plant and Soil . 10.1007/s11104-021-05103-8
Dykes, G. E. et al. (2021) 16S rRNA gene amplicon sequencing data from flooded rice paddy mesocosms treated with different silicon-rich soil amendments. Microbiology Resource Announcements 10(27). 10.1128/MRA.00178-21
Dykes, Gretchen E. et al. (2021) 16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments. Microbiology Resource Announcements 10(27), e00178-21. 10.1128/mra.00178-21
Eng, T. et al. (2021) Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor. Metabolic Engineering 66, 229-238. 10.1016/j.ymben.2021.04.015
Erlandson, Sonya R. et al. (2021) Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens. New Phytologist 234(6), 1910-1913. 10.1111/nph.17816
Ettinger, C. L. et al. (2021) Global Diversity and Biogeography of the Zostera marina Mycobiome. Applied and Environmental Microbiology 87(12), 1-19. 10.1128/AEM.02795-20
Fackler, N. et al. (2021) Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology 6(1). 10.1093/synbio/ysab008
Fackler, N. et al. (2021) Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation. Annual Review of Chemical and Biomolecular Engineering 12, 439-470. 10.1146/annurev-chembioeng-120120-021122
Felczak, M. M. et al. (2021) Zymomonas diversity and potential for biofuel production. Biotechnology for Biofuels 14(1). 10.1186/s13068-021-01958-2
Fernandes-Martins, Maria C. et al. (2021) Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring. Applied and Environmental Microbiology 87(23), e01598-21. 10.1128/aem.01598-21
Franco, Mario E. E. et al. (2021) Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. New Phytologist 233(3), 1317-1330. 10.1111/nph.17873
Gabriel, Raphael et al. (2021) The F-box protein gene exo-1 is a target for reverse engineering enzyme hypersecretion in filamentous fungi. Proceedings of the National Academy of Sciences of the United States of America 118(26), e2025689118. 10.1073/pnas.2025689118
Gallaher, S. D. et al. (2021) Widespread polycistronic gene expression in green algae. Proceedings of the National Academy of Sciences of the United States of America 118(7), 10. 10.1073/pnas.2017714118
Gao, C. et al. (2021) Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen. ISME Journal . 10.1038/s41396-021-01024-7
Gavrilov, S. N. et al. (2021) Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium. Frontiers in Microbiology 11. 10.3389/fmicb.2020.597818
Goren, E. et al. (2021) Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization. BMC Bioinformatics 22(1). 10.1186/s12859-021-04232-2
Grigoriev, I. V. et al. (2021) PhycoCosm, a comparative algal genomics resource. Nucleic Acids Res 49(D1), D1004-D1011. 10.1093/nar/gkaa898
Guerreiro, Marco Alexandre et al. (2021) Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme. G3: Genes, Genomes, Genetics 12(2), jkab398. 10.1093/g3journal/jkab398
Guo, J. R. et al. (2021) VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses. Microbiome 9(1), 13. 10.1186/s40168-020-00990-y
Hage, H. et al. (2021) Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay. Environmental Microbiology , 17. 10.1111/1462-2920.15423
Hagen, L. H. et al. (2021) Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. Isme Journal 15(2), 421-434. 10.1038/s41396-020-00769-x
Hagestad, O. C. et al. (2021) Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation. IMA Fungus 12(1). 10.1186/s43008-021-00072-0
Hao, Y. et al. (2021) The contributions from the progenitor genomes of the mesopolyploid brassiceae are evolutionarily distinct but functionally compatible. Genome Research 31(5), 799-810. 10.1101/GR.270033.120
Harris, C. R. et al. (2021) Draft genome sequence of Bordetella sp. strain FB-8, isolated from a former uranium mining area in Germany. Microbiology Resource Announcements 10(14). 10.1128/MRA.01035-19
Hawkins, Charles et al. (2021) Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. Journal of Integrative Plant Biology n/a(n/a). https://doi.org/10.1111/jipb.13163
Healey, A. L. et al. (2021) Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Communications Biology 4(1). 10.1038/s42003-021-02009-0
Heeger, Felix et al. (2021) Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica. Journal of Fungi 7(10), 854. 10.3390/jof7100854
Hempel, Priscilla P. et al. (2021) RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria. Frontiers in Microbiology 12, 739005. 10.3389/fmicb.2021.739005
Henningsen, E. C. et al. (2021) Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat. Frontiers in Plant Science 12. 10.3389/fpls.2021.657796
Heyduk, K. et al. (2021) Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae). Frontiers in Plant Science 11, 16. 10.3389/fpls.2020.573767
Hill, Richard A. et al. (2021) Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus. New Phytologist 233(2), 966-982. 10.1111/nph.17825
Hu, D. et al. (2021) Counting mRNA Copies in Intact Bacterial Cells by Fluctuation Localization Imaging-Based Fluorescence In Situ Hybridization (fliFISH). Methods in Molecular Biology 2246, 237-247. 10.1007/978-1-0716-1115-9_15
Huberman, L. B. et al. (2021) Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing. mSphere 6(5), e00564-21. 10.1128/mSphere.00564-21
Huberman, Lori B. et al. (2021) DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus. Proceedings of the National Academy of Sciences 118(13), e2009501118. 10.1073/pnas.2009501118
Hurley, A. et al. (2021) Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery. Mbio 12(1), 7. 10.1128/mBio.03432-20
Hyden, B. et al. (2021) Integrative genomics reveals paths to sex dimorphism in Salix purpurea L. Horticulture Research 8(1). 10.1038/s41438-021-00606-y
Iha, C. et al. (2021) Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium. Current Biology 31(7), 1393-1402.e5. 10.1016/j.cub.2021.01.018
Iwata, M. et al. (2021) Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives. Scientific Reports 11(1). 10.1038/s41598-021-91756-5
Jabusch, L. K. et al. (2021) Microfabrication of a chamber for high-resolution, in situ imaging of the whole root for plant–microbe interactions. International Journal of Molecular Sciences 22(15). 10.3390/ijms22157880
Jha, S. G. et al. (2021) Vision, challenges and opportunities for a plant cell atlas. eLife 10. 10.7554/eLife.66877
Jones, L. B. et al. (2021) Draft genome sequences of switchgrass diazotrophs. Microbiology Resource Announcements 10(21). 10.1128/MRA.00284-21
Jurgensen, Sophie K. et al. (2021) Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 16(4), 972-982. 10.1038/s41396-021-01143-1
Kamei, M. et al. (2021) IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains. Proceedings of the National Academy of Sciences of the United States of America 118(4), 9. 10.1073/pnas.2010003118
Kasak, K. et al. (2021) Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential. Journal of Environmental Management 299. 10.1016/j.jenvman.2021.113562
Ke, J. et al. (2021) Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture. Trends in Biotechnology 39(3), 244-261. 10.1016/j.tibtech.2020.07.008
Ke, Jing et al. (2021) CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria. Cell Chemical Biology 29. https://doi.org/10.1016/j.chembiol.2021.08.009
Ke, Jing et al. (2021) Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE. Metabolic Engineering 69, 188-197. 10.1016/j.ymben.2021.11.012
Keller-Costa, T. et al. (2021) Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals. Microbiome 9(1), 21. 10.1186/s40168-021-01031-y
Kelly, C. N. et al. (2021) Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species. Soil Biology and Biochemistry 156. 10.1016/j.soilbio.2021.108226
Khlystov, N. A. et al. (2021) A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes. Communications Biology 4(1). 10.1038/s42003-021-02464-9
Kieft, K. et al. (2021) Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. Nature Communications 12(1). 10.1038/s41467-021-23698-5
Kieft, K. et al. (2021) Virus-associated organosulfur metabolism in human and environmental systems. Cell Reports 36(5). 10.1016/j.celrep.2021.109471
Kim, J. et al. (2021) Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides. Frontiers in Bioengineering and Biotechnology 8, 16. 10.3389/fbioe.2020.612832
Kim, W. E. et al. (2021) Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics. ACS Chemical Biology 16(5), 813-819. 10.1021/acschembio.1c00157
Kirby, J. et al. (2021) Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass. Biotechnology for Biofuels 14(1). 10.1186/s13068-021-01950-w
Koch, R. A. et al. (2021) Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus. Current Biology 31(17), 3905-3914.e6. 10.1016/j.cub.2021.06.033
Köstlbacher, S. et al. (2021) Pangenomics reveals alternative environmental lifestyles among chlamydiae. Nature Communications 12(1). 10.1038/s41467-021-24294-3
Lamb, Austin et al. (2021) Bioenergy sorghum’s deep roots: A key to sustainable biomass production on annual cropland. GCB Bioenergy 14(2), 132-156. 10.1111/gcbb.12907
Lamit, L. J. et al. (2021) Peatland microbial community responses to plant functional group and drought are depth-dependent. Molecular Ecology 30(20), 5119-5136. 10.1111/mec.16125
Lanahan, Anthony et al. (2021) A Single Nucleotide Change in the polC DNA Polymerase III in Clostridium thermocellum Is Sufficient To Create a Hypermutator Phenotype. Applied and Environmental Microbiology 88(1), e01531-21. 10.1128/aem.01531-21
Langwig, M. V. et al. (2021) Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups. ISME Journal . 10.1038/s41396-021-01057-y
Lee, J. W. et al. (2021) Probing specificities of alcohol acyltransferases for designer ester biosynthesis with a high-throughput microbial screening platform. Biotechnology and Bioengineering . 10.1002/bit.27926
Lee, Jong-Won et al. (2021) Controlling selectivity of modular microbial biosynthesis of butyryl-CoA-derived designer esters. Metabolic Engineering 69, 262-274. 10.1016/j.ymben.2021.12.001
Lee, Sungeun et al. (2021) Methane-derived carbon flows into host–virus networks at different trophic levels in soil. Proceedings of the National Academy of Sciences of the United States of America 118(32), e2105124118. 10.1073/pnas.2105124118
Lei, L. et al. (2021) Plant Pan-Genomics Comes of Age. Annual Review of Plant Biology 72, 411-435. 10.1146/annurev-arplant-080720-105454
Lenz, Ryan et al. (2021) Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation. Phytopathology 111. 10.1094/phyto-02-21-0053-r
Li, B. B. et al. (2021) Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses. Soil Biology and Biochemistry 160. 10.1016/j.soilbio.2021.108349
Li, H. et al. (2021) Genetic dissection of natural variation in oilseed traits of camelina by whole-genome resequencing and QTL mapping. Plant Genome . 10.1002/tpg2.20110
Liao, Hui-Ling et al. (2021) Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi. Frontiers in Microbiology 12, 680267. 10.3389/fmicb.2021.680267
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