2015 Pubs - DOE Joint Genome Institute

Abdul Rahman, N. et al. (2015) A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes. Microbiome 3, 5. 10.1186/s40168-015-0067-8
Ai, C. et al. (2015) Complete Genome Sequences of Evolved Arsenate-Resistant Metallosphaera sedula Strains. Genome Announc 3(5). 10.1128/genomeA.01142-15
Alaba, O. A. et al. (2015) High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations. G3-Genes Genomes Genetics 5(1), 133-144. DOI 10.1534/g3.114.015008
Alawi, M. et al. (2015) Genome Sequence of Methanosarcina soligelidi SMA-21, Isolated from Siberian Permafrost-Affected Soil. Genome Announc 3(2). 10.1128/genomeA.00270-15
Albertin, C. B. et al. (2015) The octopus genome and the evolution of cephalopod neural and morphological novelties. Nature 524(7564), 220-4. 10.1038/nature14668
Alivisatos, A. P. et al. (2015) MICROBIOME. A unified initiative to harness Earth’s microbiomes. Science 350(6260), 507-8. 10.1126/science.aac8480
Ardley, J. et al. (2015) High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil. Stand Genomic Sci 10, 126. 10.1186/s40793-015-0119-5
Baker, S. E. et al. (2015) Draft Genome Sequence of Neurospora crassa Strain FGSC 73. Genome Announc 3(2). 10.1128/genomeA.00074-15
Baran, R. et al. (2015) Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun 6, 8289. 10.1038/ncomms9289
Beam, J.P. et al. (2015) Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community. ISME J 10(1), 210-24. 10.1038/ismej.2015.83
Beck, D. A. et al. (2015) Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates. Environ Microbiol 17(3), 547-54. 10.1111/1462-2920.12736
Belmann, P. et al. (2015) Bioboxes: standardised containers for interchangeable bioinformatics software. Gigascience 4, 47. 10.1186/s13742-015-0087-0
Berben, T. et al. (2015) Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake. Stand Genomic Sci 10, 105. 10.1186/s40793-015-0097-7
Berben, T. et al. (2015) Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T). Stand Genomic Sci 10, 85. 10.1186/s40793-015-0078-x
Berben, T. et al. (2015) Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1(T), a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification. Stand Genomic Sci 10, 84. 10.1186/s40793-015-0080-3
Berry, D. et al. (2015) Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells. Proc Natl Acad Sci U S A 112(2), E194-203. 10.1073/pnas.1420406112
Bianchetti, C. M. et al. (2015) Active site and laminarin binding in glycoside hydrolase family 55. J Biol Chem 290(19), 11819-32. 10.1074/jbc.M114.623579
Billings, A. F. et al. (2015) Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov. Stand Genomic Sci 10, 106. 10.1186/s40793-015-0100-3
Boundy-Mills, K. et al. (2015) The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections. Appl Environ Microbiol 81(17), 5671-4. 10.1128/AEM.01176-15
Bowers, R. M. et al. (2015) Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community. BMC Genomics 16(1), 856. 10.1186/s12864-015-2063-6
Branco, S. et al. (2015) Genetic isolation between two recently diverged populations of a symbiotic fungus. Mol Ecol . 10.1111/mec.13132
Brauer, S. L. et al. (2015) Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments. Microbiology . 10.1099/mic.0.000117
Brown, C. T. et al. (2015) Unusual biology across a group comprising more than 15% of domain Bacteria. Nature 523(7559), 208-11. 10.1038/nature14486
Brumm, P. J. et al. (2015) Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park. Stand Genomic Sci 10, 73. 10.1186/s40793-015-0031-z
Brutnell, T. P. et al. (2015) Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses. Annu Rev Plant Biol 66, 465-85. 10.1146/annurev-arplant-042811-105528
Cadillo-Quiroz, H. et al. (2015) Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland. Genome Announc 3(6). 10.1128/genomeA.01280-15
Cantor, M. et al. (2015) Elviz – exploration of metagenome assemblies with an interactive visualization tool. BMC Bioinformatics 16, 130. 10.1186/s12859-015-0566-4
Carr, S. A. et al. (2015) Abundant Atribacteria in deep marine sediment from the Adelie Basin, Antarctica. Front Microbiol 6, 872. 10.3389/fmicb.2015.00872
Castelle, C. J. et al. (2015) Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Curr Biol 25(6), 690-701. 10.1016/j.cub.2015.01.014
Chang, Y. et al. (2015) Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. Genome Biol Evol 7(6), 1590-601. 10.1093/gbe/evv090
Chapman, J. A. et al. (2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol 16, 26. 10.1186/s13059-015-0582-8
Checcucci, A. et al. (2015) The integrated microbial genome resource of analysis. Methods Mol Biol 1231, 289-95. 10.1007/978-1-4939-1720-4_18
Chochois, V. et al. (2015) Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments. Plant Physiol 168(3), 953-67. 10.1104/pp.15.00095
Choi, D. H. et al. (2015) High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture. Stand Genomic Sci 10, 98. 10.1186/s40793-015-0088-8
Christen, M. et al. (2015) Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis. ACS Synth Biol 4(8), 927-34. 10.1021/acssynbio.5b00087
Christensen, G. A. et al. (2015) Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH. J Bacteriol 197(1), 29-39. 10.1128/JB.02083-14
Chubukov, V. et al. (2015) Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC. Appl Environ Microbiol 81(14), 4690-6. 10.1128/AEM.01102-15
Cohen, M. F. et al. (2015) Genome Sequence of the Alkaline-Tolerant Cellulomonas sp. Strain FA1. Genome Announc 3(3). 10.1128/genomeA.00646-15
Couturier, M. et al. (2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels 8, 216. 10.1186/s13068-015-0407-8
Couturier, M. et al. (2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels 8, 216. 10.1186/s13068-015-0407-8
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413. Stand Genomic Sci 10, 31. 10.1186/s40793-015-0018-9
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512. Stand Genomic Sci 10, 13. 10.1186/1944-3277-10-13
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Lebeckia – nodulating Burkholderia dilworthii strain WSM3556(T). Stand Genomic Sci 10, 64. 10.1186/s40793-015-0048-3
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Mimosa asperata – nodulating Cupriavidus sp. strain AMP6. Stand Genomic Sci 10, 80. 10.1186/s40793-015-0074-1
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176. Stand Genomic Sci 10, 79. 10.1186/s40793-015-0072-3
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Mimosa asperata – nodulating Cupriavidus sp. strain AMP6. Stand Genomic Sci 10, 80. 10.1186/s40793-015-0074-1
De Meyer, S. E. et al. (2015) High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176. Stand Genomic Sci 10, 79. 10.1186/s40793-015-0072-3
Dedysh, S. N. et al. (2015) Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase. Genome Announc 3(2). 10.1128/genomeA.01555-14
Deng, K. et al. (2015) Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Front Bioeng Biotechnol 3, 153. 10.3389/fbioe.2015.00153
Dhillon, B. et al. (2015) Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen. Proc Natl Acad Sci U S A 112(11), 3451-6. 10.1073/pnas.1424293112
Dore, J. et al. (2015) Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. New Phytol . 10.1111/nph.13546
Eichorst, S. A. et al. (2015) Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils. FEMS Microbiol Ecol . 10.1093/femsec/fiv106
Eshraghi, L. et al. (2015) High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 – an effective microsymbiont of an Indigofera sp. growing in Australia. Stand Genomic Sci 10, 87. 10.1186/s40793-015-0073-2
Evans, J. et al. (2015) Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing. Plant J . 10.1111/tpj.13041
Fiedler, Jason D. et al. (2015) High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing. The Plant Genome 8(2). 10.3835/plantgenome2014.10.0065
Firrincieli, A. et al. (2015) Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1. Front Microbiol 6, 978. 10.3389/fmicb.2015.00978
Fitzgerald, T. L. et al. (2015) Brachypodium as an emerging model for cereal-pathogen interactions. Ann Bot 115(5), 717-31. 10.1093/aob/mcv010
Floudas, D. et al. (2015) Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genet Biol 76, 78-92. 10.1016/j.fgb.2015.02.002
Gao, X. Y. et al. (2015) Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China. Stand Genomic Sci 10, 1. 10.1186/1944-3277-10-1
Gaudana, S. B. et al. (2015) Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria. Photosynth Res 126(1), 99-109. 10.1007/s11120-014-0059-8
Gaudana, S. B. et al. (2015) Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria. Photosynth Res 126(1), 99-109. 10.1007/s11120-014-0059-8
Gilbert, D. et al. (2015) The Joint Genome Institute Offers Resources Beyond a Core Facility. Microbe 10(7), 289-293. 10.1128/microbe.10.289.1
Goordial, J. et al. (2015) Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost. Stand Genomic Sci 10, 61. 10.1186/s40793-015-0043-8
Gordon, S. P. et al. (2015) Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing. PLoS One 10(7), e0132628. 10.1371/journal.pone.0132628
Gutierrez, T. et al. (2015) Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announc 3(2). 10.1128/genomeA.00207-15
Gutierrez, T. et al. (2015) Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium. Genome Announc 3(4). 10.1128/genomeA.00793-15
Gutierrez, T. et al. (2015) Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announc 3(3). 10.1128/genomeA.00672-15
Haase, N. J. et al. (2015) Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis. G3 (Bethesda) 5(8), 1593-602. 10.1534/g3.115.017665
Hadjithomas, M. et al. (2015) IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites. MBio 6(4). 10.1128/mBio.00932-15
Hahnke, R. L. et al. (2015) High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes. Stand Genomic Sci 10, 46. 10.1186/s40793-015-0032-y
Hamilton, R. et al. (2015) Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems. Genome Announc 3(3). 10.1128/genomeA.00515-15
Haushalter, R. W. et al. (2015) Development of an orthogonal fatty acid biosynthesis system in E. coli for oleochemical production. Metab Eng 30, 1-6. 10.1016/j.ymben.2015.04.003
He, S. et al. (2015) Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions. MBio 6(3), e00066-15. 10.1128/mBio.00066-15
He, S. et al. (2015) Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions. MBio 6(3), e00066-15. 10.1128/mBio.00066-15
Hedlund, B. P. et al. (2015) Uncultivated thermophiles: current status and spotlight on ‘Aigarchaeota’. Curr Opin Microbiol 25, 136-45. 10.1016/j.mib.2015.06.008
Hedlund, B. P. et al. (2015) High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism. Genome Announc 3(6). 10.1128/genomeA.01410-15
Hedlund, B. P. et al. (2015) High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism. Genome Announc 3(6). 10.1128/genomeA.01410-15
Hedrick, P. W. et al. (2015) Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis. New Phytol . 10.1111/nph.13639
Hemme, C. L. et al. (2015) Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. Front Microbiol 6, 1205. 10.3389/fmicb.2015.01205
Hudson, C. M. et al. (2015) Lignin-modifying processes in the rhizosphere of arid land grasses. Environ Microbiol 17(12), 4965-78. 10.1111/1462-2920.13020
Hug, L. A. et al. (2015) Aquifer environment selects for microbial species cohorts in sediment and groundwater. ISME J . 10.1038/ismej.2015.2
Hug, L. A. et al. (2015) Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages. Environ Microbiol . 10.1111/1462-2920.12930
Hultman, J. et al. (2015) Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes. Nature 521(7551), 208-12. 10.1038/nature14238
Huntemann, M. et al. (2015) The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4). Stand Genomic Sci 10, 86. 10.1186/s40793-015-0077-y
Hwang, C. et al. (2015) Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment. Genome Announc 3(1). 10.1128/genomeA.01449-14
Inskeep, W. P. et al. (2015) Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function. Front Microbiol 6, 1044. 10.3389/fmicb.2015.01044
Kalyuzhnaya, M. G. et al. (2015) Draft genome sequences of gammaproteobacterial methanotrophs isolated from lake washington sediment. Genome Announc 3(2). 10.1128/genomeA.00103-15
Kang, D. D. et al. (2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities. PeerJ 3, e1165. 10.7717/peerj.1165
Kantor, R. S. et al. (2015) Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics. Environ Microbiol . 10.1111/1462-2920.12936
Kato, S. et al. (2015) Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria. Frontiers in Microbiology 6. ARTN 1265 10.3389/fmicb.2015.01265
Kazakov, A. E. et al. (2015) sigma54-dependent regulome in Desulfovibrio vulgaris Hildenborough. BMC Genomics 16, 919. 10.1186/s12864-015-2176-y
Kemp, D. W. et al. (2015) Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata. PLoS One 10(12), e0143790. 10.1371/journal.pone.0143790
Kirby, J. et al. (2015) Enhancing Terpene Yield from Sugars via Novel Routes to 1-Deoxy-d-Xylulose 5-Phosphate. Appl Environ Microbiol 81(1), 130-8. 10.1128/AEM.02920-14
Kohler, A. et al. (2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists (vol 47, pg 410, 2015). Nature Genetics 47(4), 410-415.
Kotak, M. et al. (2015) Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes. Genome Announc 3(2). 10.1128/genomeA.00060-15
Kourist, R. et al. (2015) Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems. MBio 6(4). 10.1128/mBio.00918-15
Labonte, J. M. et al. (2015) Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. ISME J . 10.1038/ismej.2015.48
Lam, K. K. et al. (2015) FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads. Bioinformatics . 10.1093/bioinformatics/btv280
Lao, J. et al. (2015) Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum). Proteomics . 10.1002/pmic.201400487
Lau, S. C. et al. (2015) Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009P(T)), a representative of the Roseobacter group. Stand Genomic Sci 10, 51. 10.1186/s40793-015-0050-9
Laviad, S. et al. (2015) High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass. Stand Genomic Sci 10, 21. 10.1186/s40793-015-0003-3
Laviad, S. et al. (2015) High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass. Stand Genomic Sci 10, 29. 10.1186/s40793-015-0010-4
Lebeis, S. L. et al. (2015) Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa. Science . 10.1126/science.aaa8764
Lee, L. L. et al. (2015) Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “Thermoanaerobacter cellulolyticus”. Genome Announc 3(3). 10.1128/genomeA.00440-15
Lichius, A. et al. (2015) Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype. BMC Genomics 16, 326. 10.1186/s12864-015-1526-0
Liu, L. et al. (2015) A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation. Mol Plant . 10.1016/j.molp.2015.11.004
Lizhen Shi et al. (2015) Performance evaluation and tuning of BioPig for genomic analysis. Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems , 1-7. 10.1145/2831244.2831252
Lowe, C. J. et al. (2015) The deuterostome context of chordate origins. Nature 520(7548), 456-65. 10.1038/nature14434
Lozano, R. et al. (2015) Identification and distribution of the NBS-LRR gene family in the Cassava genome. BMC Genomics 16, 360. 10.1186/s12864-015-1554-9
Luef, B. et al. (2015) Diverse uncultivated ultra-small bacterial cells in groundwater. Nat Commun 6, 6372. 10.1038/ncomms7372
Mak, W. S. et al. (2015) Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Nat Commun 6, 10005. 10.1038/ncomms10005
Markowitz, V. M. et al. (2015) Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System. Trends Microbiol 23(11), 730-41. 10.1016/j.tim.2015.07.012
Markowitz, V. M. et al. (2015) Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System. Trends Microbiol 23(11), 730-41. 10.1016/j.tim.2015.07.012
Matsuda, Y. et al. (2015) A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis. Cytogenet Genome Res . 10.1159/000381292
Mazur, A. et al. (2015) High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland. Stand Genomic Sci 10, 36. 10.1186/s40793-015-0029-6
McCarthy, S. et al. (2015) Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives. Genome Announc 3(3). 10.1128/genomeA.00549-15
McCarthy, S. et al. (2015) Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution. Appl Environ Microbiol . 10.1128/AEM.03225-15
McIlroy, S. J. et al. (2015) High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov. Stand Genomic Sci 10, 23. 10.1186/s40793-015-0013-1
McTaggart, T. L. et al. (2015) Draft genome sequences of five new strains of methylophilaceae isolated from lake washington sediment. Genome Announc 3(1). 10.1128/genomeA.01511-14
McTaggart, T. L. et al. (2015) Draft genomes of two strains of flavobacterium isolated from lake washington sediment. Genome Announc 3(1). 10.1128/genomeA.01597-14
McTaggart, T. L. et al. (2015) Draft Genome of Pseudomonas sp. Strain 11/12A, Isolated from Lake Washington Sediment. Genome Announc 3(1). 10.1128/genomeA.01587-14
McTaggart, T. L. et al. (2015) Draft Genome of Janthinobacterium sp. RA13 Isolated from Lake Washington Sediment. Genome Announc 3(1). 10.1128/genomeA.01588-14
Medema, Marnix H. et al. (2015) Minimum Information about a Biosynthetic Gene cluster. Nat Chem Biol 11(9), 625-631. 10.1038/nchembio.1890
Mhamdi, R. et al. (2015) High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris. Stand Genomic Sci 10, 34. 10.1186/s40793-015-0005-1
Min, B. et al. (2015) Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. J Biotechnol 211, 42-43. 10.1016/j.jbiotec.2015.06.426
Muchero, W. et al. (2015) High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus. BMC Genomics 16, 24. 10.1186/s12864-015-1215-z
Mukherjee, S. et al. (2015) Large-scale contamination of microbial isolate genomes by Illumina PhiX control. Stand Genomic Sci 10, 18. 10.1186/1944-3277-10-18
Mukherjee, S. et al. (2015) High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India. Stand Genomic Sci 10, 8. 10.1186/1944-3277-10-8
Munoz-Amatriain, M. et al. (2015) Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant J . 10.1111/tpj.12959
Muraguchi, H. et al. (2015) Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea. PLoS One 10(10), e0141586. 10.1371/journal.pone.0141586
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