2019 Pubs - DOE Joint Genome Institute

Albert, R. A. et al. (2019) Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water. Int J Syst Evol Microbiol 69(5), 1376-1383. 10.1099/ijsem.0.003319
Ali, S. et al. (2019) High-density linkage map reveals QTL underlying growth traits in AP13xVS16 biparental population of switchgrass. Global Change Biology Bioenergy 11(5), 672-690. 10.1111/gcbb.12592
Almasi, E. et al. (2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae. New Phytol . 10.1111/nph.16032
Almasi, E. et al. (2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae. New Phytol . 10.1111/nph.16032
Alvarez-Escribano, I. et al. (2019) Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants. BMC Biol 17(1), 88. 10.1186/s12915-019-0702-0
Anasontzis, G. E. et al. (2019) Broad-specificity GH131 beta-glucanases are a hallmark of Fungi and Oomycetes that colonise plants. Environ Microbiol . 10.1111/1462-2920.14596
Armaleo, D. et al. (2019) The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. BMC Genomics 20(1), 605. 10.1186/s12864-019-5629-x
Armstrong, Zachary et al. (2019) Systematic Screening of Synthetic Gene-Encoded Enzymes for Synthesis of Modified Glycosides. ACS Catalysis 9(4), 3219-3227. 10.1021/acscatal.8b05179
Avontuur, J. R. et al. (2019) Genome-informed Bradyrhizobium taxonomy: where to from here?. Syst Appl Microbiol . 10.1016/j.syapm.2019.03.006
Badis, Yacine et al. (2019) Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide. European Journal of Phycology , 1-10. 10.1080/09670262.2019.1664769
Barbi, F. et al. (2019) Fungal ecological strategies reflected in gene transcription – a case study of two litter decomposers. Environ Microbiol . 10.1111/1462-2920.14873
Basso, V. et al. (2019) An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots. Plant Cell Environ . 10.1111/pce.13702
Benocci, T. et al. (2019) Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass. Biotechnol Biofuels 12, 81. 10.1186/s13068-019-1422-y
Benocci, T. et al. (2019) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails. Biotechnol J 14(4), e1800185. 10.1002/biot.201800185
Benucci, G. M. N. et al. (2019) Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea. Microbiol Resour Announc 8(50). 10.1128/MRA.00857-19
Berben, T. et al. (2019) Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria. Front Microbiol 10, 160. 10.3389/fmicb.2019.00160
Berghuis, B. A. et al. (2019) Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens. Proc Natl Acad Sci U S A 116(11), 5037-5044. 10.1073/pnas.1815631116
Bernhardsgrutter, I. et al. (2019) Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2-Binding Potential of Reductases. J Am Chem Soc 141(25), 9778-9782. 10.1021/jacs.9b03431
Bertioli, D. J. et al. (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nat Genet 51(5), 877-884. 10.1038/s41588-019-0405-z
Bewick, A. J. et al. (2019) Diversity of cytosine methylation across the fungal tree of life. Nat Ecol Evol 3(3), 479-490. 10.1038/s41559-019-0810-9
Borrel, G. et al. (2019) Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. Nat Microbiol 4(4), 603-613. 10.1038/s41564-019-0363-3
Boyd, J. A. et al. (2019) Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. ISME J . 10.1038/s41396-018-0343-2
Brisson, V. et al. (2019) A New Method to Correct for Habitat Filtering in Microbial Correlation Networks. Frontiers in Microbiology 10. 10.3389/fmicb.2019.00585
Brisson, V. L. et al. (2019) Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil. Sci Rep 9(1), 15611. 10.1038/s41598-019-52148-y
Bruckbauer, S. T. et al. (2019) Experimental evolution of extreme resistance to ionizing radiation in Escherichia coli after 50 cycles of selection. J Bacteriol . 10.1128/JB.00784-18
Brzoska, R. M. et al. (2019) Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium. Microbiol Resour Announc 8(14). 10.1128/MRA.01701-18
Bushman, T. J. et al. (2019) Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14. Microbiol Resour Announc 8(43). 10.1128/MRA.01024-19
Calhoun, S. et al. (2019) Yeasts and how they came to be. Nat Rev Microbiol . 10.1038/s41579-019-0274-6
Camargo, A. P. et al. (2019) Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Sci Data 6(1), 140. 10.1038/s41597-019-0141-3
Camiolo, S. et al. (2019) An analysis of codon bias in six red yeast species. Yeast 36(1), 53-64. 10.1002/yea.3359
Carr, S. A. et al. (2019) Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. ISME J 13(6), 1457-1468. 10.1038/s41396-019-0352-9
Casado Lopez, S. et al. (2019) Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens. Microbiol Resour Announc 8(18). 10.1128/MRA.00264-19
Chaput, G. et al. (2019) Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source. Microbiol Resour Announc 8(18). 10.1128/MRA.00409-19
Chen, F. et al. (2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon. Curr Protoc Plant Biol , e20088. 10.1002/cppb.20088
Chen, F. et al. (2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon. Curr Protoc Plant Biol , e20088. 10.1002/cppb.20088
Chen, I. A. et al. (2019) IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. Nucleic Acids Res 47(D1), D666-D677. 10.1093/nar/gky901
Chevrette, M. G. et al. (2019) Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces. Front Microbiol 10, 2170. 10.3389/fmicb.2019.02170
Chhetri, H. B. et al. (2019) Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits. New Phytol 223(1), 293-309. 10.1111/nph.15777
Chiniquy, D. et al. (2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens. Plant J . 10.1111/tpj.14497
Chiniquy, D. et al. (2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens. Plant J 100(5), 1022-1035. 10.1111/tpj.14497
Close, D. M. et al. (2019) Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis. Mol Microbiol 112(6), 1784-1797. 10.1111/mmi.14393
Cooper, E. A. et al. (2019) A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism. BMC Genomics 20(1), 420. 10.1186/s12864-019-5734-x
Couradeau, E. et al. (2019) Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun 10(1), 2770. 10.1038/s41467-019-10542-0
Crisp, P. A. et al. (2019) Variation and inheritance of small RNAs in maize inbreds and F1 hybrids. Plant Physiol . 10.1104/pp.19.00817
Cui, J. et al. (2019) Characterization of the Clostridium thermocellum AdhE, NfnAB, ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum. Metab Eng 51, 32-42. 10.1016/j.ymben.2018.09.006
Dalcin Martins, P. et al. (2019) Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols. Appl Environ Microbiol 85(12). 10.1128/AEM.00189-19
Daly, P. et al. (2019) Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens. Appl Environ Microbiol . 10.1128/AEM.01828-19
Daly, P. et al. (2019) Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens. J Biotechnol . 10.1016/j.jbiotec.2019.11.014
Daly, R. A. et al. (2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing. Nat Microbiol 4(2), 352-361. 10.1038/s41564-018-0312-6
Davenport, E. J. et al. (2019) Metatranscriptomic Analyses of Diel Metabolic Functions During a Microcystis Bloom in Western Lake Erie (United States). Frontiers in Microbiology 10. 10.3389/fmicb.2019.02081
Davis, W. J. et al. (2019) Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). Mol Phylogenet Evol 133, 152-163. 10.1016/j.ympev.2019.01.006
de Vries, M. et al. (2019) “Interrogating the grainyhead-like 2 (Grhl2) genomic locus identifies an enhancer element that regulates palatogenesis in mouse”. Dev Biol . 10.1016/j.ydbio.2019.11.015
Diamond, S. et al. (2019) Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Nat Microbiol . 10.1038/s41564-019-0449-y
Ding, Yezhang et al. (2019) Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Nature Plants 5(10), 1043-1056. 10.1038/s41477-019-0509-6
Doud, D. F. R. et al. (2019) Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. ISME J . 10.1038/s41396-019-0557-y
Dudley, Q. M. et al. (2019) Cell-free biosynthesis of limonene using enzyme-enriched Escherichia coli lysates. Synth Biol (Oxf) 4(1), ysz003. 10.1093/synbio/ysz003
Duell, E. R. et al. (2019) Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli. Microb Cell Fact 18(1), 32. 10.1186/s12934-019-1080-6
Dunivin, T. K. et al. (2019) A global survey of arsenic-related genes in soil microbiomes. BMC Biol 17(1), 45. 10.1186/s12915-019-0661-5
Eloe-Fadrosh, E. A. et al. (2019) Genome gazing in ammonia-oxidizing archaea. Nat Rev Microbiol 17(9), 531. 10.1038/s41579-019-0248-8
Eloe-Fadrosh, E. A. et al. (2019) Towards a genome-based virus taxonomy. Nat Microbiol 4(8), 1249-1250. 10.1038/s41564-019-0511-9
Erbilgin, O. et al. (2019) MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol 14(4), 704-714. 10.1021/acschembio.8b01107
Felczak, M. M. et al. (2019) Expression of Phosphofructokinase Is Not Sufficient to Enable Embden-Meyerhof-Parnas Glycolysis in Zymomonas mobilis ZM4. Front Microbiol 10, 2270. 10.3389/fmicb.2019.02270
Fernandez-Bayo, J. D. et al. (2019) The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization. J Appl Microbiol 126(6), 1729-1741. 10.1111/jam.14258
Fernandez-Pozo, N. et al. (2019) PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. Plant J . 10.1111/tpj.14607
Fisher, B. F. et al. (2019) Site-Selective C-H Halogenation Using Flavin-Dependent Halogenases Identified via Family-Wide Activity Profiling. ACS Cent Sci 5(11), 1844-1856. 10.1021/acscentsci.9b00835
Fleming, S. R. et al. (2019) Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides. J Am Chem Soc 141(2), 758-762. 10.1021/jacs.8b11521
Francis, T. B. et al. (2019) Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae. Syst Appl Microbiol 42(1), 41-53. 10.1016/j.syapm.2018.08.007
Frandsen, K. E. H. et al. (2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases. J Biol Chem . 10.1074/jbc.RA119.009223
Frandsen, K. E. H. et al. (2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases. J Biol Chem 294(45), 17117-17130. 10.1074/jbc.RA119.009223
Furches, A. et al. (2019) Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence. Front Plant Sci 10, 1249. 10.3389/fpls.2019.01249
Garcia-Lopez, M. et al. (2019) Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Front Microbiol 10, 2083. 10.3389/fmicb.2019.02083
Garcia-Lopez, M. et al. (2019) Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Front Microbiol 10, 2083. 10.3389/fmicb.2019.02083
Glasgow, E. M. et al. (2019) Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases. J Mol Biol 431(6), 1217-1233. 10.1016/j.jmb.2019.01.024
Gordon, S. P. et al. (2019) PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution. BMC Genomics 20(1), 580. 10.1186/s12864-019-5828-5
Grady, K. L. et al. (2019) Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops. Nat Commun 10(1), 4135. 10.1038/s41467-019-11974-4
Guarnaccia, V. et al. (2019) Phyllosticta citricarpa and sister species of global importance to Citrus. Mol Plant Pathol . 10.1111/mpp.12861
Guarnaccia, V. et al. (2019) Phyllosticta citricarpa and sister species of global importance to Citrus. Mol Plant Pathol 20(12), 1619-1635. 10.1111/mpp.12861
Hamm, J. N. et al. (2019) Unexpected host dependency of Antarctic Nanohaloarchaeota. Proc Natl Acad Sci U S A . 10.1073/pnas.1905179116
Handakumbura, P. P. et al. (2019) Metabotyping as a Stopover in Genome-to-Phenome Mapping. Sci Rep 9(1), 1858. 10.1038/s41598-019-38483-0
Hartman, K. et al. (2019) Interactions between plants and soil shaping the root microbiome under abiotic stress. Biochem J 476(19), 2705-2724. 10.1042/BCJ20180615
Hausmann, B. et al. (2019) Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member. MBio 10(1). 10.1128/mBio.02189-18
He, S. et al. (2019) Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes. mSphere 4(1). 10.1128/mSphere.00436-18
Hoarfrost, A. et al. (2019) Global ecotypes in the ubiquitous marine clade SAR86. ISME J . 10.1038/s41396-019-0516-7
Hogfors-Ronnholm, E. et al. (2019) Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials. Sci Data 6(1), 207. 10.1038/s41597-019-0222-3
Huang, J. et al. (2019) Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes. ISME J . 10.1038/s41396-019-0414-z
Hussey, S. G. et al. (2019) A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops. ACS Synth Biol 8(2), 463-465. 10.1021/acssynbio.8b00440
Izrael-Zivkovic, L. et al. (2019) High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals. Extremophiles 23(4), 399-405. 10.1007/s00792-019-01092-w
Jain, R. et al. (2019) Genome sequence of the model rice variety KitaakeX. BMC Genomics 20(1), 905. 10.1186/s12864-019-6262-4
Jang, H. B. et al. (2019) Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks. Nature Biotechnology 37(6), 632-+. 10.1038/s41587-019-0100-8
Jiang, L. R. et al. (2019) Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1. Rice 12. 10.1186/s12284-019-0308-8
Jimenez, D. J. et al. (2019) Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. FEMS Microbiol Ecol . 10.1093/femsec/fiz186
Kang, D. W. D. et al. (2019) MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies. Peerj 7. 10.7717/peerj.7359
Karp, P. D. et al. (2019) A Comparison of Microbial Genome Web Portals. Front Microbiol 10, 208. 10.3389/fmicb.2019.00208
Karunanithi, P. S. et al. (2019) Terpene Synthases as Metabolic Gatekeepers in the Evolution of Plant Terpenoid Chemical Diversity. Front Plant Sci 10, 1166. 10.3389/fpls.2019.01166
Ke, J. et al. (2019) Pathway and Gene Discovery from Natural Hosts and Organisms. Methods Mol Biol 1927, 1-9. 10.1007/978-1-4939-9142-6_1
Ke, J. et al. (2019) Multi-chassis engineering for heterologous production of microbial natural products. Curr Opin Biotechnol 62, 88-97. 10.1016/j.copbio.2019.09.005
Khan, M. A. W. et al. (2019) Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils. FEMS Microbiol Ecol 95(2). 10.1093/femsec/fiy230
Khasanova, A. et al. (2019) The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass. Front Plant Sci 10, 366. 10.3389/fpls.2019.00366
Khosravi, C. et al. (2019) Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. BMC Genomics 20(1), 853. 10.1186/s12864-019-6235-7
Kim, J. et al. (2019) Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose-Derived Sugars. Biotechnol J 14(9), e1800441. 10.1002/biot.201800441
Kowalczyk, J. E. et al. (2019) The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds. Front Bioeng Biotechnol 7, 229. 10.3389/fbioe.2019.00229
Krizsan, K. et al. (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proc Natl Acad Sci U S A . 10.1073/pnas.1817822116
Kruger, K. et al. (2019) In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. ISME J . 10.1038/s41396-019-0476-y
Kruger, K. et al. (2019) In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. ISME J 13(11), 2800-2816. 10.1038/s41396-019-0476-y
Kubicek, C. P. et al. (2019) Evolution and comparative genomics of the most common Trichoderma species. BMC Genomics 20(1), 485. 10.1186/s12864-019-5680-7
Labbe, J. et al. (2019) Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase. Nat Plants 5(7), 676-680. 10.1038/s41477-019-0469-x
Ladau, J. et al. (2019) Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology. Trends Microbiol . 10.1016/j.tim.2019.03.003
Landa, M. et al. (2019) Sulfur metabolites that facilitate oceanic phytoplankton-bacteria carbon flux. ISME J . 10.1038/s41396-019-0455-3
Langley, S. et al. (2019) Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots. Microbiol Resour Announc 8(37). 10.1128/MRA.00432-19
LaPierre, N. et al. (2019) De novo Nanopore read quality improvement using deep learning. BMC Bioinformatics 20(1), 552. 10.1186/s12859-019-3103-z
Larson, S. et al. (2019) Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium). Theor Appl Genet . 10.1007/s00122-019-03357-6
Lee, L. L. et al. (2019) Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely Thermophilic Caldicellulosiruptor Species. Appl Environ Microbiol 85(3). 10.1128/AEM.01983-18
Lee, M. D. et al. (2019) Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content. Environ Microbiol 21(5), 1677-1686. 10.1111/1462-2920.14552
Lee, Y. H. et al. (2019) Genomic characterization of carbapenem-resistant Shewanella algae isolated from Asian hard clam (Meretrix lusoria). Aquaculture 500, 300-304. 10.1016/j.aquaculture.2018.10.028
Li, Q. et al. (2019) Insight into the Bacterial Endophytic Communities of Peach Cultivars Related to Crown Gall Disease Resistance. Appl Environ Microbiol . 10.1128/AEM.02931-18
Liao, H. L. et al. (2019) Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition. Mol Plant Microbe Interact 32(7), 853-864. 10.1094/MPMI-05-18-0133-R
Linz, A. M. et al. (2019) Time-series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems. Limnology and Oceanography . 10.1002/lno.11306
Lonardi, S. et al. (2019) The genome of cowpea (Vigna unguiculata [L.] Walp.). Plant J 98(5), 767-782. 10.1111/tpj.14349
Lowry, D. B. et al. (2019) QTL x environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient. Proc Natl Acad Sci U S A 116(26), 12933-12941. 10.1073/pnas.1821543116
Lubbers, R. J. M. et al. (2019) Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger. Front Bioeng Biotechnol 7, 249. 10.3389/fbioe.2019.00249
Luek, J. L. et al. (2019) Organic sulfur fingerprint indicates continued injection fluid signature 10 months after hydraulic fracturing. Environ Sci Process Impacts 21(2), 206-213. 10.1039/c8em00331a
Lutkenhaus, R. et al. (2019) Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes. Genetics . 10.1534/genetics.119.302749
Madsen, C. et al. (2019) Synthetic Biology Open Language (SBOL) Version 2.3. J Integr Bioinform . 10.1515/jib-2019-0025
Malmstrom, R. R. et al. (2019) Advancing Genome-Resolved Metagenomics beyond the Shotgun. mSystems 4(3). 10.1128/mSystems.00118-19
Mao, X. et al. (2019) Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor. Water Res 158, 146-156. 10.1016/j.watres.2019.04.038
Marotz, C. et al. (2019) Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. Biotechniques . 10.2144/btn-2018-0192
Martinez, M. A. et al. (2019) Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Syst Appl Microbiol 42(1), 54-66. 10.1016/j.syapm.2018.12.003
Masonbrink, R. et al. (2019) The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. BMC Genomics 20(1), 119. 10.1186/s12864-019-5485-8
Matheus Carnevali, P. B. et al. (2019) Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nat Commun 10(1), 463. 10.1038/s41467-018-08246-y
Mazaheri, M. et al. (2019) Genome-wide association analysis of stalk biomass and anatomical traits in maize. BMC Plant Biol 19(1), 45. 10.1186/s12870-019-1653-x
Mitchell, A. et al. (2019) mSphere of Influence: the View from the Microbiologists of the Future. mSphere 4(3). 10.1128/mSphere.00348-19
Mitros, T. et al. (2019) A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis. Dev Biol 452(1), 8-20. 10.1016/j.ydbio.2019.03.015
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