News & Publications

2020 Pubs

Abraham, B. S. et al. (2020) Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades. Environmental Microbiome 15(1). 10.1186/s40793-019-0352-4
Akob, D. M. et al. (2020) Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek. Appl Environ Microbiol 86(24). 10.1128/AEM.01424-20
Al-Shayeb, B. et al. (2020) Clades of huge phages from across Earth’s ecosystems. Nature 578(7795), 425-431. 10.1038/s41586-020-2007-4
Alteio, L. V. et al. (2020) Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. mSystems 5(2). 10.1128/mSystems.00768-19
Anandharaj, M. et al. (2020) Constructing a yeast to express the largest cellulosome complex on the cell surface. Proc Natl Acad Sci U S A 117(5), 2385-2394. 10.1073/pnas.1916529117
Arroyo-Herrera, I. et al. (2020) Draft genome of five Cupriavidus plantarum strains: agave, maize and sorghum plant-associated bacteria with resistance to metals. 3 Biotech 10(6), 242. 10.1007/s13205-020-02210-8
Avci, B. et al. (2020) Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. ISME J . 10.1038/s41396-020-0601-y
Bahri, B. A. et al. (2020) Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits. Bioenergy Research 13(1), 79-99. 10.1007/s12155-020-10090-2
Baig, H. et al. (2020) Synthetic biology open language (SBOL) version 3.0.0. J Integr Bioinform . 10.1515/jib-2020-0017
Banerjee, D. et al. (2020) Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale. Nature Communications 11(1). 10.1038/s41467-020-19171-4
Barthel, S. et al. (2020) Enhancing Terminal Deoxynucleotidyl Transferase Activity on Substrates with 3′ Terminal Structures for Enzymatic De Novo DNA Synthesis. Genes (Basel) 11(1). 10.3390/genes11010102
Bayer, B. et al. (2020) Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions. ISME J . 10.1038/s41396-020-00828-3
Beier, S. et al. (2020) The environment drives microbial trait variability in aquatic habitats. Mol Ecol 29(23), 4605-4617. 10.1111/mec.15656
Bell, T. H. et al. (2020) Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome. Microbiol Resour Announc 9(1). 10.1128/MRA.01361-19
Beri, D. et al. (2020) Development of a thermophilic coculture for corn fiber conversion to ethanol. Nat Commun 11(1), 1937. 10.1038/s41467-020-15704-z
Boratto, P. V. M. et al. (2020) Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii. Proc Natl Acad Sci U S A . 10.1073/pnas.2001637117
Borowska-Zuchowska, N. et al. (2020) The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum. Plant J . 10.1111/tpj.14869
Bowman, E. K. et al. (2020) Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach. Proc Natl Acad Sci U S A 117(31), 18424-18430. 10.1073/pnas.2007413117
Brenton, Z. W. et al. (2020) Species-Specific Duplication Event Associated with Elevated Levels of Nonstructural Carbohydrates in Sorghum bicolor. G3 (Bethesda) 10(5), 1511-1520. 10.1534/g3.119.400921
Cao, M. et al. (2020) A genetic toolbox for metabolic engineering of Issatchenkia orientalis. Metab Eng 59, 87-97. 10.1016/j.ymben.2020.01.005
Casarrubia, S. et al. (2020) Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus. Front Microbiol 11, 341. 10.3389/fmicb.2020.00341
Chen, M. L. et al. (2020) Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f. Front Microbiol 11, 376. 10.3389/fmicb.2020.00376
Chen, Z. J. et al. (2020) Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nat Genet 52(5), 525-533. 10.1038/s41588-020-0614-5
Chroumpi, T. et al. (2020) Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator. Microbiol Res 234, 126426. 10.1016/j.micres.2020.126426
Chuckran, P. F. et al. (2020) Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil. Microbiol Resour Announc 9(44). 10.1128/MRA.00895-20
Cole, B. J. et al. (2020) Power in isolation: insights from single cells. Nat Rev Microbiol . 10.1038/s41579-020-0381-4
Coleine, C. et al. (2020) Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities. Microbiol Resour Announc 9(10). 10.1128/MRA.01599-19
Cooper, C. J. et al. (2020) Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. Commun Biol 3(1), 320. 10.1038/s42003-020-1047-5
Crits-Christoph, A. et al. (2020) Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow. ISME J 14(7), 1834-1846. 10.1038/s41396-020-0655-x
Crouch, J. A. et al. (2020) Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen. Phytopathology , PHYTO12190478A. 10.1094/PHYTO-12-19-0478-A
Danczak, R. E. et al. (2020) Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems. Msystems 5(2). 10.1128/mSystems.00098-20
Ding, Y. et al. (2020) Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. Nat Plants 6(11), 1375-1388. 10.1038/s41477-020-00787-9
Dippel, A. B. et al. (2020) Development of Ratiometric Bioluminescent Sensors for in Vivo Detection of Bacterial Signaling. ACS Chem Biol 15(4), 904-914. 10.1021/acschembio.9b00800
Dong, O. X. et al. (2020) Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9. Nat Commun 11(1), 1178. 10.1038/s41467-020-14981-y
Eichorst, S. A. et al. (2020) One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil. Microbiol Resour Announc 9(5). 10.1128/MRA.01087-19
Espino-Vazquez, A. N. et al. (2020) Narnaviruses: novel players in fungal-bacterial symbioses. ISME J . 10.1038/s41396-020-0638-y
Evans, S. W. et al. (2020) Embrace experimentation in biosecurity governance. Science 368(6487), 138-140. 10.1126/science.aba2932
Fernandez-Bayo, J. D. et al. (2020) Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes. J Ind Microbiol Biotechnol 47(12), 1031-1044. 10.1007/s10295-020-02326-z
Flores-Nunez, V. M. et al. (2020) Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti. Front Microbiol 10, 3044. 10.3389/fmicb.2019.03044
Flores-Tinoco, C. E. et al. (2020) Co-catabolism of arginine and succinate drives symbiotic nitrogen fixation. Mol Syst Biol 16(6), e9419. 10.15252/msb.20199419
Gao, C. et al. (2020) Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics. Nat Commun 11(1), 34. 10.1038/s41467-019-13913-9
Gazitua, M. C. et al. (2020) Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. ISME J . 10.1038/s41396-020-00825-6
Gluck-Thaler, E. et al. (2020) The architecture of metabolism maximizes biosynthetic diversity in the largest class of fungi. Mol Biol Evol . 10.1093/molbev/msaa122
Gluck-Thaler, E. et al. (2020) The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi. Mol Biol Evol 37(10), 2838-2856. 10.1093/molbev/msaa122
Gordon, S. P. et al. (2020) Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nat Commun 11(1), 3670. 10.1038/s41467-020-17302-5
Grettenberger, C. L. et al. (2020) A phylogenetically novel cyanobacterium most closely related to Gloeobacter. ISME J . 10.1038/s41396-020-0668-5
Grieb, A. et al. (2020) A pipeline for targeted metagenomics of environmental bacteria. Microbiome 8(1), 21. 10.1186/s40168-020-0790-7
Haas, K. N. et al. (2020) Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa. Int J Syst Evol Microbiol 70(1), 23-34. 10.1099/ijsem.0.003698
Haridas, S. et al. (2020) 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Stud Mycol 96, 141-153. 10.1016/j.simyco.2020.01.003
Hatmaker, E. A. et al. (2020) Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590(T), a Thermophilic Bacterium. Microbiology Resource Announcements 9(25). 10.1128/MRA.00589-20
Herve, V. et al. (2020) Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites. PeerJ 8, e8614. 10.7717/peerj.8614
Hofmeister, B. T. et al. (2020) A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa. Genome Biol 21(1), 259. 10.1186/s13059-020-02162-5
Hofmeyr, S. et al. (2020) Terabase-scale metagenome coassembly with MetaHipMer. Sci Rep 10(1), 10689. 10.1038/s41598-020-67416-5
Hordt, A. et al. (2020) Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 11, 468. 10.3389/fmicb.2020.00468
Howard-Varona, C. et al. (2020) Phage-specific metabolic reprogramming of virocells. ISME J 14(4), 881-895. 10.1038/s41396-019-0580-z
Hufsky, F. et al. (2020) The International Virus Bioinformatics Meeting 2020. Viruses 12(12). 10.3390/v12121398

G. I. Testing Consortium et al. (2020) Blueprint for a pop-up SARS-CoV-2 testing lab. Nat Biotechnol 38(7), 791-797. 10.1038/s41587-020-0583-3

Karim, A. S. et al. (2020) Modular cell-free expression plasmids to accelerate biological design in cells. Synth Biol (Oxf) 5(1), ysaa019. 10.1093/synbio/ysaa019
Karunanithi, P. S. et al. (2020) The foxtail millet (Setaria italica) terpene synthase gene family. Plant J . 10.1111/tpj.14771
Kjaerbolling, I. et al. (2020) A comparative genomics study of 23 Aspergillus species from section Flavi. Nat Commun 11(1), 1106. 10.1038/s41467-019-14051-y
Kleiner, M. et al. (2020) Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities. Microbiome 8(1). 10.1186/s40168-020-00935-5
Klonowska, A. et al. (2020) Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil. BMC Genomics 21(1), 214. 10.1186/s12864-020-6623-z
Kloosterman, A. M. et al. (2020) Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lantibiotics. PLoS Biol 18(12), e3001026. 10.1371/journal.pbio.3001026
Kostlbacher, S. et al. (2020) Draft Genome Sequences of Chlamydiales Bacterium STE3 and Neochlamydia sp. Strain AcF84, Endosymbionts of Acanthamoeba spp. Microbiol Resour Announc 9(20). 10.1128/MRA.00220-20
Koutrouli, M. et al. (2020) A Guide to Conquer the Biological Network Era Using Graph Theory. Frontiers in Bioengineering and Biotechnology 8. 10.3389/fbioe.2020.00034
Koziaeva, V. V. et al. (2020) Biodiversity of Magnetotactic Bacteria in the Freshwater Lake Beloe Bordukovskoe, Russia. Microbiology 89(3), 348-358. 10.1134/S002626172003008x
Kroeger, M. E. et al. (2020) Rainforest-to-pasture conversion stimulates soil methanogenesis across the Brazilian Amazon. ISME J . 10.1038/s41396-020-00804-x
Kruger, A. et al. (2020) Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways. Metab Eng 62, 95-105. 10.1016/j.ymben.2020.06.004
Laviad-Shitrit, S. et al. (2020) Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host. PeerJ 8, e8822. 10.7717/peerj.8822
Lee, K. S. et al. (2020) Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions. Nat Protoc . 10.1038/s41596-020-00427-8
Li, K. et al. (2020) Deconvolute individual genomes from metagenome sequences through short read clustering. PeerJ 8, e8966. 10.7717/peerj.8966
Li, Z. et al. (2020) Single-parent expression drives dynamic gene expression complementation in maize hybrids. Plant J . 10.1111/tpj.15042
Liu, H. et al. (2020) Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PLoS One 15(11), e0241867. 10.1371/journal.pone.0241867
Lofgren, L. A. et al. (2020) Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. New Phytol . 10.1111/nph.17160
MacKinnon, K. J. M. et al. (2020) Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. New Phytologist . 10.1111/nph.16507
MacQueen, A. H. et al. (2020) Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean. Genetics 215(1), 267-284. 10.1534/genetics.120.303038
Madhaiyan, M. et al. (2020) Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants. Antonie Van Leeuwenhoek 113(11), 1617-1632. 10.1007/s10482-020-01468-5
Madin, J. S. et al. (2020) A synthesis of bacterial and archaeal phenotypic trait data. Sci Data 7(1), 170. 10.1038/s41597-020-0497-4
Mak, W. S. et al. (2020) Discovery, Design, and Structural Characterization of Alkane-Producing Enzymes across the Ferritin-like Superfamily. Biochemistry 59(40), 3834-3843. 10.1021/acs.biochem.0c00665
Mamidi, S. et al. (2020) A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nat Biotechnol 38(10), 1203-1210. 10.1038/s41587-020-0681-2
Marques-Galvez, J. E. et al. (2020) Desert truffle genomes reveal their reproductive modes and new insights into plant-fungal interaction and ectendomycorrhizal lifestyle. New Phytol . 10.1111/nph.17044
Marques, W. L. et al. (2020) Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae. Enzyme Microb Technol 140, 109623. 10.1016/j.enzmictec.2020.109623
Marques, Wesley Leoricy et al. (2020) Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae. Enzyme and Microbial Technology 140, 109623. 10.1016/j.enzmictec.2020.109623
Martiny, J. B. H. et al. (2020) The emergence of microbiome centres. Nat Microbiol 5(1), 2-3. 10.1038/s41564-019-0644-x
Mazzoli, R. et al. (2020) Construction of lactic acid overproducing Clostridium thermocellum through enhancement of lactate dehydrogenase expression. Enzyme Microb Technol 141. 10.1016/j.enzmictec.2020.109645
Mei, R. et al. (2020) Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters. Front Microbiol 11. 10.3389/fmicb.2020.593006
Metcalfe, K. S. et al. (2020) Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy. ISME J . 10.1038/s41396-020-00757-1
Meyers, D. J. et al. (2020) Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug. Microbiol Resour Announc 9(15). 10.1128/MRA.00104-20
Mitros, T. et al. (2020) Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature Communications 11(1). 10.1038/s41467-020-18923-6
Miyauchi, S. et al. (2020) Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. DNA Res . 10.1093/dnares/dsaa011
Miyauchi, S. et al. (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications 11(1). 10.1038/s41467-020-18795-w
Mobilian, C. et al. (2020) Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh. Limnology and Oceanography Letters . 10.1002/lol2.10171
Morrow, M. A. et al. (2020) Draft Genome Sequence of a Terrestrial Planctomycete, Singulisphaera sp. Strain GP187, Isolated from Forest Soil. Microbiol Resour Announc 9(50). 10.1128/MRA.00956-20
Mushinski, R. M. et al. (2020) Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests. Glob Chang Biol . 10.1111/gcb.15439
Nayfach, S. et al. (2020) A genomic catalog of Earth’s microbiomes. Nat Biotechnol . 10.1038/s41587-020-0718-6
Nayfach, S. et al. (2020) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nat Biotechnol . 10.1038/s41587-020-00774-7
Neches, R. Y. et al. (2020) Recombination should not be an afterthought. Nat Rev Microbiol 18(11), 606. 10.1038/s41579-020-00451-1
Nelson, W. C. et al. (2020) Biases in genome reconstruction from metagenomic data. PeerJ 8, e10119. 10.7717/peerj.10119
Nizovoy, P. et al. (2020) Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica. FEMS Yeast Res . 10.1093/femsyr/foaa056
Nuccio, E. E. et al. (2020) Niche differentiation is spatially and temporally regulated in the rhizosphere. Isme Journal 14(4), 999-1014. 10.1038/s41396-019-0582-x
Ortiz, Y. et al. (2020) Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla. PLoS One 15(4), e0231083. 10.1371/journal.pone.0231083
Oshlag, J. Z. et al. (2020) Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris. Appl Environ Microbiol 86(3). 10.1128/AEM.01888-19
Ouyang, Y. et al. (2020) Short-Term Nitrogen Fertilization Affects Microbial Community Composition and Nitrogen Mineralization Functions in an Agricultural Soil. Appl Environ Microbiol 86(5). 10.1128/AEM.02278-19
Palmer, M. et al. (2020) Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase. Front Microbiol 11, 583361. 10.3389/fmicb.2020.583361
Paterson, A. H. et al. (2020) The Evolution of an Invasive Plant, Sorghum halepense L. (‘Johnsongrass’). Front Genet 11, 317. 10.3389/fgene.2020.00317
Paver, S. F. et al. (2020) Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry. Environ Microbiol 22(1), 433-446. 10.1111/1462-2920.14862
Peng, Z. et al. (2020) A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus. Plant J 104(5), 1215-1232. 10.1111/tpj.14993
Peralta, A. L. et al. (2020) Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina). Microbiol Resour Announc 9(41). 10.1128/MRA.00882-20
Peris, D. et al. (2020) Synthetic hybrids of six yeast species. Nat Commun 11(1), 2085. 10.1038/s41467-020-15559-4
Piatkowski, B. T. et al. (2020) Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway. Mol Phylogenet Evol 151, 106904. 10.1016/j.ympev.2020.106904
Plett, K. L. et al. (2020) Intra-species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus. Environ Microbiol . 10.1111/1462-2920.15320
Prasanna, A. N. et al. (2020) Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships. Syst Biol 69(1), 17-37. 10.1093/sysbio/syz029
Probst, A. J. et al. (2020) Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria. ISME J 14(6), 1547-1560. 10.1038/s41396-020-0624-4
Props, R. et al. (2020) Temperature and Nutrient Levels Correspond with Lineage-Specific Microdiversification in the Ubiquitous and Abundant Freshwater Genus Limnohabitans. Appl Environ Microbiol 86(10). 10.1128/AEM.00140-20
Rasmussen, A. N. et al. (2020) In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay. Microb Ecol . 10.1007/s00248-020-01621-7
Reji, L. et al. (2020) Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System. Front Microbiol 11, 1075. 10.3389/fmicb.2020.01075
Ruiz-Duenas, F. J. et al. (2020) Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity. Mol Biol Evol . 10.1093/molbev/msaa301
Ruprecht, C. et al. (2020) A Glycan Array-Based Assay for the Identification and Characterization of Plant Glycosyltransferases. Angew Chem Int Ed Engl . 10.1002/anie.202003105
Sabuda, M. C. et al. (2020) A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite. Environ Microbiol 22(6), 2329-2345. 10.1111/1462-2920.15006
Saito, M. A. et al. (2020) Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean. Nature Geoscience 13(5). 10.1038/s41561-020-0565-6
Scarborough, M. J. et al. (2020) Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov.. Applied and Environmental Microbiology 86(3). 10.1128/AEM.02242-19
Schmidt, J. E. et al. (2020) Impacts of directed evolution and soil management legacy on the maize rhizobiome. Soil Biology & Biochemistry 145. ARTN 107794 10.1016/j.soilbio.2020.107794
Schriml, L. M. et al. (2020) COVID-19 pandemic reveals the peril of ignoring metadata standards. Sci Data 7(1), 188. 10.1038/s41597-020-0524-5
Schulz, F. et al. (2020) Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus. mSystems 5(3). 10.1128/mSystems.00048-20
Schulz, F. et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature 578(7795), 432-436. 10.1038/s41586-020-1957-x
Selbmann, L. et al. (2020) Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel) 10(12). 10.3390/life10120362
Seshadri, R. et al. (2020) A bacterial toolkit for plants. Nat Rev Microbiol 18(3), 124. 10.1038/s41579-020-0333-z
Shaiber, A. et al. (2020) Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome. Genome Biology 21(1). 10.1186/s13059-020-02195-w
Shaw, C. et al. (2020) Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research. Front Microbiol 11, 572131. 10.3389/fmicb.2020.572131
Sheremet, A. et al. (2020) Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil. Environ Microbiol . 10.1111/1462-2920.15054
Sierra-Garcia, I. N. et al. (2020) In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs. Sci Total Environ 715, 136646. 10.1016/j.scitotenv.2020.136646
Simakov, O. et al. (2020) Deeply conserved synteny resolves early events in vertebrate evolution. Nat Ecol Evol 4(6), 820-830. 10.1038/s41559-020-1156-z
Spasov, E. et al. (2020) High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant. ISME J 14(7), 1857-1872. 10.1038/s41396-020-0650-2
St James, A. R. et al. (2020) Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions. FEMS Microbiol Ecol 96(5). 10.1093/femsec/fiaa050
Steindorff, A. S. et al. (2020) Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes. Environ Microbiol . 10.1111/1462-2920.15273
Stover, E. et al. (2020) Rationale for reconsidering current regulations restricting use of hybrids in orange juice. Horticulture Research 7(1). 10.1038/s41438-020-0277-5
Strepis, N. et al. (2020) Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species. BMC Genomics 21(1). 10.1186/s12864-019-6410-x
Stursova, M. et al. (2020) Production of Fungal Mycelia in a Temperate Coniferous Forest Shows Distinct Seasonal Patterns. J Fungi (Basel) 6(4). 10.3390/jof6040190
Toubiana, D. et al. (2020) Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance. Sci Rep 10(1), 4489. 10.1038/s41598-020-61081-4
Tseng, C. H. et al. (2020) Detection of S83V GyrA mutation in quinolone-resistant Shewanella algae using comparative genomics. J Microbiol Immunol Infect . 10.1016/j.jmii.2020.04.019
Turner, J. C. et al. (2020) Getting to the Root of Plant-Mediated Methane Emissions and Oxidation in a Thermokarst Bog. Journal of Geophysical Research-Biogeosciences 125(11). 10.1029/2020JG005825
van Munster, J. M. et al. (2020) Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose. Biotechnol Biofuels 13, 69. 10.1186/s13068-020-01702-2
Walker, C. et al. (2020) Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001. Microbiol Resour Announc 9(9). 10.1128/MRA.01356-19
Waltemath, D. et al. (2020) The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). J Integr Bioinform . 10.1515/jib-2020-0005
Wilken, S. E. et al. (2020) Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. Metab Eng Commun 10, e00107. 10.1016/j.mec.2019.e00107
Woods, D. P. et al. (2020) Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon. New Phytol . 10.1111/nph.16546
Wu, V. W. et al. (2020) The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus. Proc Natl Acad Sci U S A 117(11), 6003-6013. 10.1073/pnas.1915611117
Xie, M. et al. (2020) Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect. Plant Direct 4(1), e00178. 10.1002/pld3.178
Yelick, K. et al. (2020) The parallelism motifs of genomic data analysis. Philos Trans A Math Phys Eng Sci 378(2166), 20190394. 10.1098/rsta.2019.0394
Zhang, J. et al. (2020) Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoe fedtschenkoi, a plant with crassulacean acid metabolism. Gigascience 9(3). 10.1093/gigascience/giaa018
Zhou, R. et al. (2020) A willow sex chromosome reveals convergent evolution of complex palindromic repeats. Genome Biol 21(1), 38. 10.1186/s13059-020-1952-4
Zhu, X. et al. (2020) Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem. Microbiome 8(1), 22. 10.1186/s40168-019-0780-9