2023 Pubs - DOE Joint Genome Institute

(2023) Fast and accurate identification of plasmids and viruses in sequencing data using geNomad. Nature Biotechnology , 1-2. 10.1038/s41587-023-01982-7
Adriaenssens, Evelien M. et al. (2023) Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification. Nature Biotechnology 41(7), 898-902. 10.1038/s41587-023-01844-2
Akparov, Zeynal et al. (2023) Two major chromosome evolution events with unrivaled conserved gene content in pomegranate. Frontiers in Plant Science 14, 1039211. 10.3389/fpls.2023.1039211
AminiTabrizi, Roya et al. (2023) Microbial sensitivity to temperature and sulfate deposition modulates greenhouse gas emissions from peat soils. Global Change Biology 29(7), 1951-1970. 10.1111/gcb.16614
Amses, Kevin et al. (2023) Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi. Fungal Genetics and Biology 169, 103838. 10.1016/j.fgb.2023.103838
Amundson, Kaela K et al. (2023) Long-term CRISPR locus dynamics and stable host-virus co-existence in subsurface fractured shales. Current Biology . 10.1016/j.cub.2023.06.033
Anstett, Julia et al. (2023) A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters. Scientific Data 10(1), 332. 10.1038/s41597-023-02222-y
Auer, Lucas et al. (2023) Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems. New Phytologist . 10.1111/nph.19471
Babaei, Mahsa et al. (2023) Coupling High-Throughput and Targeted Screening for Identification of Nonobvious Metabolic Engineering Targets. ACS Synthetic Biology 13(1), 168-182. 10.1021/acssynbio.3c00396
Back, Daniel et al. (2023) Identification, Heterologous Expression, and Characterization of the Tolypodiol Biosynthetic Gene Cluster through an Integrated Approach. ACS Chemical Biology 18(8), 1797-1807. 10.1021/acschembio.3c00225
Bader, Jonathan et al. (2023) Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments. , 2097-2108. 10.1145/3624062.3626283
Bader, Jonathan et al. (2023) Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments. , 2097-2108. 10.1145/3624062.3626283
Bader, Jonathan et al. (2023) Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments. , 2097-2108. 10.1145/3624062.3626283
Baker, Christopher R. et al. (2023) Metabolomic, photoprotective, and photosynthetic acclimatory responses to post‐flowering drought in sorghum. Plant Direct 7(11), e545. 10.1002/pld3.545
Baker, Christopher R. et al. (2023) Metabolomic, photoprotective, and photosynthetic acclimatory responses to post‐flowering drought in sorghum. Plant Direct 7(11), e545. 10.1002/pld3.545
Baker, Christopher R. et al. (2023) Metabolomic, photoprotective, and photosynthetic acclimatory responses to post‐flowering drought in sorghum. Plant Direct 7(11), e545. 10.1002/pld3.545
Baltoumas, Fotis A et al. (2023) NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes. Nucleic Acids Research 52(D1), d502-d512. 10.1093/nar/gkad800
Baltoumas, Fotis A et al. (2023) NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes. Nucleic Acids Research 52(D1), d502-d512. 10.1093/nar/gkad800
Baltoumas, Fotis A et al. (2023) NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes. Nucleic Acids Research 52(D1), d502-d512. 10.1093/nar/gkad800
Baltoumas, Fotis A. et al. (2023) Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters. Frontiers in Bioinformatics 3, 1157956. 10.3389/fbinf.2023.1157956
Barnett, Samuel E. et al. (2023) Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. mBio 14(2), e03584-22. 10.1128/mbio.03584-22
Barnett, Samuel E. et al. (2023) Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling. Environmental Microbiology . 10.1111/1462-2920.16395
Barrett, Kristian et al. (2023) Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.. Nucleic Acids Research 51(W1), w108-w114. 10.1093/nar/gkad385
Bhaskara, Govinal Badiger et al. (2023) Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants. Molecular Biology and Evolution 40(10), msad210. 10.1093/molbev/msad210
Bhattacharjee, Ananda S. et al. (2023) Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids. ISME Communications 3(1), 10. 10.1038/s43705-022-00210-8
Bieniada, Aneta et al. (2023) Methane Cycling Microbial Community Characteristics: Comparing Natural, Actively Extracted, Restored and Unrestored Boreal Peatlands. Wetlands 43(7), 83. 10.1007/s13157-023-01726-y
Bittremieux, Wout et al. (2023) Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature Communications 14(1), 8488. 10.1038/s41467-023-44035-y
Blaby-Haas, Crysten E. et al. (2023) Chapter 5 Trace metal nutrition and response to deficiency. , 167-203. 10.1016/b978-0-12-821430-5.00002-x
Blaby, Ian K. et al. (2023) Chapter 4 Functional genomics of Chlamydomonas reinhardtii. , 65-84. 10.1016/b978-0-12-822457-1.00013-3
Blum, Laura N. et al. (2023) Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH. Environmental Microbiology . 10.1111/1462-2920.16375
Booker, Anne E. et al. (2023) Life strategies for Aminicenantia in subseafloor oceanic crust. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-10. 10.1038/s41396-023-01454-5
Bowen, Jennifer L. et al. (2023) Microbial Ecology in a Changing Climate. , 289-314. 10.1201/9781003126096-18
Bowers, Robert M. et al. (2023) Gone with a trace: cataloguing the disappearing gut microbes. Nature Reviews Microbiology , 1-1. 10.1038/s41579-023-00968-1
Brainard, Scott H. et al. (2023) The first two chromosome‐scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus. Plant Biotechnology Journal . 10.1111/pbi.14199
Brainard, Scott H. et al. (2023) The first two chromosome‐scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus. Plant Biotechnology Journal . 10.1111/pbi.14199
Brainard, Scott H. et al. (2023) The first two chromosome‐scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus. Plant Biotechnology Journal . 10.1111/pbi.14199
Brown, Jennifer L. et al. (2023) High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi. Frontiers in Fungal Biology 4, 1171100. 10.3389/ffunb.2023.1171100
Brown, Malory O. et al. (2023) Sterol methyltransferases in uncultured bacteria complicate eukaryotic biomarker interpretations. Nature Communications 14(1), 1859. 10.1038/s41467-023-37552-3
Buessecker, Steffen et al. (2023) Mcr-dependent methanogenesis in Archaeoglobaceae enriched from a terrestrial hot spring. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 17(10), 1649-1659. 10.1038/s41396-023-01472-3
Bunbury, Freddy et al. (2023) Shedding light on spatial structure and dynamics in phototrophic biofilms. Current Opinion in Systems Biology 36, 100480. 10.1016/j.coisb.2023.100480
Bunbury, Freddy et al. (2023) Shedding light on spatial structure and dynamics in phototrophic biofilms. Current Opinion in Systems Biology 36, 100480. 10.1016/j.coisb.2023.100480
Bunbury, Freddy et al. (2023) Shedding light on spatial structure and dynamics in phototrophic biofilms. Current Opinion in Systems Biology 36, 100480. 10.1016/j.coisb.2023.100480
Caddell, Daniel et al. (2023) Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid. Phytobiomes Journal . 10.1094/pbiomes-02-23-0011-r
Camargo, Antonio Pedro et al. (2023) Identification of mobile genetic elements with geNomad. Nature Biotechnology , 1-10. 10.1038/s41587-023-01953-y
Camargo, Antonio Pedro et al. (2023) IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic Acids Research 52(D1), d164-d173. 10.1093/nar/gkad964
Camargo, Antonio Pedro et al. (2023) IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic Acids Research 52(D1), d164-d173. 10.1093/nar/gkad964
Camargo, Antonio Pedro et al. (2023) IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic Acids Research 52(D1), d164-d173. 10.1093/nar/gkad964
Carr, Erin C et al. (2023) Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche.. G3: Genes, Genomes, Genetics . 10.1093/g3journal/jkad110
Chai, Yen Ning et al. (2023) Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum. mSystems 9(1), e01190-23. 10.1128/msystems.01190-23
Chan, Clara S. et al. (2023) Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions. Applied and Environmental Microbiology 89(12), e00570-23. 10.1128/aem.00570-23
Chemelewski, Robert et al. (2023) Epicuticular wax accumulation and regulation of wax pathway gene expression during bioenergy Sorghum stem development. Frontiers in Plant Science 14, 1227859. 10.3389/fpls.2023.1227859
Chemelewski, Robert et al. (2023) Epicuticular wax accumulation and regulation of wax pathway gene expression during bioenergy Sorghum stem development. Frontiers in Plant Science 14, 1227859. 10.3389/fpls.2023.1227859
Chemelewski, Robert et al. (2023) Epicuticular wax accumulation and regulation of wax pathway gene expression during bioenergy Sorghum stem development. Frontiers in Plant Science 14, 1227859. 10.3389/fpls.2023.1227859
Chen, Yen-Ho et al. (2023) Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions. The CRISPR Journal . 10.1089/crispr.2022.0096
Chiang, Chang-Hwa et al. (2023) Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction. Proceedings of the National Academy of Sciences of the United States of America 120(15), e2218248120. 10.1073/pnas.2218248120
Chiu, Beverly K. et al. (2023) Membrane lipid and expression responses of Saccharolobus islandicus REY15A to acid and cold stress. Frontiers in Microbiology 14, 1219779. 10.3389/fmicb.2023.1219779
Coclet, Clement et al. (2023) Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11(1), 237. 10.1186/s40168-023-01666-z
Coclet, Clement et al. (2023) Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11(1), 237. 10.1186/s40168-023-01666-z
Coclet, Clement et al. (2023) Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11(1), 237. 10.1186/s40168-023-01666-z
Collier, Jackie L et al. (2023) The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Current Biology 33(23), 5199-5207.e4. 10.1016/j.cub.2023.10.009
Collier, Jackie L et al. (2023) The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Current Biology 33(23), 5199-5207.e4. 10.1016/j.cub.2023.10.009
Collier, Jackie L et al. (2023) The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Current Biology 33(23), 5199-5207.e4. 10.1016/j.cub.2023.10.009
Coutinho, Felipe H. et al. (2023) Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. Microbiome 11(1), 118. 10.1186/s40168-023-01547-5
Crandall, Johnathan G. et al. (2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism. PLOS Biology 21(11), e3001909. 10.1371/journal.pbio.3001909
Crandall, Johnathan G. et al. (2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism. PLOS Biology 21(11), e3001909. 10.1371/journal.pbio.3001909
Crandall, Johnathan G. et al. (2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism. PLOS Biology 21(11), e3001909. 10.1371/journal.pbio.3001909
Davidi, Lital et al. (2023) Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management. Proceedings of the National Academy of Sciences of the United States of America 120(30), e2305495120. 10.1073/pnas.2305495120
Davidson, Russell B et al. (2023) Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. Bioinformatics 39(8), btad511. 10.1093/bioinformatics/btad511
de Mesquita, Clifton P. Bueno et al. (2023) Methyl-Based Methanogenesis: an Ecological and Genomic Review. Microbiology and Molecular Biology Reviews 87(1), e00024-22. 10.1128/mmbr.00024-22
de Oliveira, Camilla Martins et al. (2023) Trichoderma harzianum transcriptome in response to the nematode Pratylenchus brachyurus. Biological Control 183, 105245. 10.1016/j.biocontrol.2023.105245
de Raad, Markus et al. (2023) Mass spectrometry imaging–based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme. Journal of Biological Chemistry 299(3), 102939. 10.1016/j.jbc.2023.102939
Devos, Katrien M. et al. (2023) Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nature Communications 14(1), 3694. 10.1038/s41467-023-38915-6
Diesel, Jose et al. (2023) A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera). BMC Genomics 24(1), 543. 10.1186/s12864-023-09658-x
Dort, E. N. et al. (2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits. Scientific Reports 13(1), 17203. 10.1038/s41598-023-44005-w
Dort, E. N. et al. (2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits. Scientific Reports 13(1), 17203. 10.1038/s41598-023-44005-w
Dort, E. N. et al. (2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits. Scientific Reports 13(1), 17203. 10.1038/s41598-023-44005-w
Dubinkina, Veronika et al. (2023) A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains. Microbiology Spectrum 12(1), e02536-23. 10.1128/spectrum.02536-23
Dubinkina, Veronika et al. (2023) A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains. Microbiology Spectrum 12(1), e02536-23. 10.1128/spectrum.02536-23
Dubinkina, Veronika et al. (2023) A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains. Microbiology Spectrum 12(1), e02536-23. 10.1128/spectrum.02536-23
Duncan, Anthony et al. (2023) Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms. Data in Brief 47, 108990. 10.1016/j.dib.2023.108990
Džunková, Mária et al. (2023) Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium. Microbiome 11(1), 130. 10.1186/s40168-023-01560-8
Edwards, Joseph A et al. (2023) Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range. Current Biology 33(10), 1926-1938.e6. 10.1016/j.cub.2023.03.078
Ellenbogen, Jared B. et al. (2023) Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost. mSystems 9(1), e00698-23. 10.1128/msystems.00698-23
Eme, Laura et al. (2023) Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes. Nature 618(7967), 992-999. 10.1038/s41586-023-06186-2
Eng, Ashley Y. et al. (2023) Thermal adaptation of soil microbial growth traits in response to chronic warming. Applied and Environmental Microbiology 89(11), e00825-23. 10.1128/aem.00825-23
Eng, Ashley Y. et al. (2023) Thermal adaptation of soil microbial growth traits in response to chronic warming. Applied and Environmental Microbiology 89(11), e00825-23. 10.1128/aem.00825-23
Eng, Ashley Y. et al. (2023) Thermal adaptation of soil microbial growth traits in response to chronic warming. Applied and Environmental Microbiology 89(11), e00825-23. 10.1128/aem.00825-23
Esser, Sarah P. et al. (2023) A predicted CRISPR-mediated symbiosis between uncultivated archaea. Nature Microbiology 8(9), 1619-1633. 10.1038/s41564-023-01439-2
Ettinger, Cassandra L. et al. (2023) Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability. Microbiome 11(1), 103. 10.1186/s40168-023-01554-6
Fernandes‐Martins, Maria C. et al. (2023) Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs. Environmental Microbiology 25(5), 1022-1040. 10.1111/1462-2920.16340
Fernández-González, Antonio J. et al. (2023) Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils. Forests 14(7), 1383. 10.3390/f14071383
Feurtey, Alice et al. (2023) A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature Communications 14(1), 1059. 10.1038/s41467-023-36674-y
Foreman, Christine M. et al. (2023) Seven genome sequences of bacterial, environmental isolates from Pony Lake, Antarctica. Microbiology Resource Announcements 13(1), e00744-23. 10.1128/mra.00744-23
Francin-Allami, Mathilde et al. (2023) Mixed-Linkage Glucan Is the Main Carbohydrate Source and Starch Is an Alternative Source during Brachypodium Grain Germination. International Journal of Molecular Sciences 24(7), 6821. 10.3390/ijms24076821
Fremin, Brayon J. et al. (2023) Identification of over ten thousand candidate structured RNAs in viruses and phages. Computational and Structural Biotechnology Journal 21, 5630-5639. 10.1016/j.csbj.2023.11.010
Fremin, Brayon J. et al. (2023) Identification of over ten thousand candidate structured RNAs in viruses and phages. Computational and Structural Biotechnology Journal 21, 5630-5639. 10.1016/j.csbj.2023.11.010
Fremin, Brayon J. et al. (2023) Identification of over ten thousand candidate structured RNAs in viruses and phages. Computational and Structural Biotechnology Journal 21, 5630-5639. 10.1016/j.csbj.2023.11.010
Gauttam, Rahul et al. (2023) Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida. Microbial Biotechnology 16(3), 645-661. 10.1111/1751-7915.14205
George, Nikhil A. et al. (2023) CRISPR-resolved virus-host interactions in a municipal landfill include non-specific viruses, hyper-targeted viral populations, and interviral conflicts. Scientific Reports 13(1), 5611. 10.1038/s41598-023-32078-6
Gilbert, Naomi E. et al. (2023) Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean. mSystems 8(2), e01260-22. 10.1128/msystems.01260-22
Gopal, Madan R. et al. (2023) Reductive Enzyme Cascades for Valorization of Polyethylene Terephthalate Deconstruction Products. ACS Catalysis 13(7), 4778-4789. 10.1021/acscatal.2c06219
Green, Stefan J. et al. (2023) Metagenomic Methods for Addressing NASA’s Planetary Protection Policy Requirements on Future Missions: A Workshop Report. Astrobiology . 10.1089/ast.2022.0044
Grosjean, Nicolas et al. (2023) Whisperings from not so silent mutations. Nature Reviews Microbiology 21(4), 221-221. 10.1038/s41579-023-00864-8
Gryganskyi, Andrii P. et al. (2023) Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?. Microorganisms 11(7), 1830. 10.3390/microorganisms11071830
Guerillot, Pamela et al. (2023) A Remarkable Expansion of Oligopeptide Transporter Genes in Rust Fungi (Pucciniales) Suggests a Specialization in Nutrient Acquisition for Obligate Biotrophy.. Phytopathology 113(2), 252-264. 10.1094/phyto-04-22-0128-r
Gupta, Yogesh K. et al. (2023) Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi. Nature Communications 14(1), 1835. 10.1038/s41467-023-37551-4
Hage, Hayat et al. (2023) An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi. Microbial Genomics 9(4), mgen000990. 10.1099/mgen.0.000990
Hammack, Aeron Tynes et al. (2023) Machine learning sheds light on microbial dark proteins. Nature Reviews Microbiology 22(2), 63-63. 10.1038/s41579-023-01002-0
Hammack, Aeron Tynes et al. (2023) Machine learning sheds light on microbial dark proteins. Nature Reviews Microbiology 22(2), 63-63. 10.1038/s41579-023-01002-0
Hammack, Aeron Tynes et al. (2023) Machine learning sheds light on microbial dark proteins. Nature Reviews Microbiology 22(2), 63-63. 10.1038/s41579-023-01002-0
Haridas, Sajeet et al. (2023) T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats. mBio 14(2), e00261-23. 10.1128/mbio.00261-23
Harwood, Thomas V. et al. (2023) BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports 13(1), 13462. 10.1038/s41598-023-40496-9
He, Shaomei et al. (2023) Diversity, distribution, and expression of opsin genes in freshwater lakes. Molecular Ecology 32(11), 2798-2817. 10.1111/mec.16891
Healey, Adam L. et al. (2023) Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature Plants 9(2), 238-254. 10.1038/s41477-022-01333-5
Hehenberger, Elisabeth et al. (2023) Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias. Molecular Biology and Evolution 40(12), msad251. 10.1093/molbev/msad251
Hehenberger, Elisabeth et al. (2023) Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias. Molecular Biology and Evolution 40(12), msad251. 10.1093/molbev/msad251
Hehenberger, Elisabeth et al. (2023) Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias. Molecular Biology and Evolution 40(12), msad251. 10.1093/molbev/msad251
Hensen, Noah et al. (2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution 189, 107938. 10.1016/j.ympev.2023.107938
Hensen, Noah et al. (2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution 189, 107938. 10.1016/j.ympev.2023.107938
Hensen, Noah et al. (2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution 189, 107938. 10.1016/j.ympev.2023.107938
Hildebrand, Gina A et al. (2023) Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants. The Science of The Total Environment 899, 165689. 10.1016/j.scitotenv.2023.165689
Hill, Thomas C. J. et al. (2023) Resolving the controls over the production and emission of ice-nucleating particles in sea spray. Environmental Science Atmospheres 3(6), 970-990. 10.1039/d2ea00154c
Ho, Harrison et al. (2023) Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning. PeerJ 11, e16129. 10.7717/peerj.16129
Honeker, Linnea K. et al. (2023) Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest. Nature Microbiology 8(8), 1480-1494. 10.1038/s41564-023-01432-9
Hooker, Casey A. et al. (2023) A Genetic Engineering Toolbox for the Lignocellulolytic Anaerobic Gut Fungus Neocallimastix frontalis. ACS Synthetic Biology 12(4), 1034-1045. 10.1021/acssynbio.2c00502
Howe, Adina et al. (2023) Seasonal activities of the phyllosphere microbiome of perennial crops. Nature Communications 14(1), 1039. 10.1038/s41467-023-36515-y
Hwang, Yunha et al. (2023) Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats. Nature Microbiology 8(5), 946-957. 10.1038/s41564-023-01347-5
Hyden, Brennan et al. (2023) Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination. Plant Direct 7(11), e3546. 10.1002/pld3.546
Hyden, Brennan et al. (2023) Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination. Plant Direct 7(11), e3546. 10.1002/pld3.546
Hyden, Brennan et al. (2023) Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination. Plant Direct 7(11), e3546. 10.1002/pld3.546
Ionescu, Danny et al. (2023) Genomic Mysteries of Giant Bacteria: Insights and Implications. Genome Biology and Evolution 15(9), evad163. 10.1093/gbe/evad163
Jagtap, Sujit Sadashiv et al. (2023) Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements 12(12), e00435-23. 10.1128/mra.00435-23
Jagtap, Sujit Sadashiv et al. (2023) Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements 12(11), e00426-23. 10.1128/mra.00426-23
Jagtap, Sujit Sadashiv et al. (2023) Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements 12(11), e00426-23. 10.1128/mra.00426-23
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