Publications

Fiamenghi, M. et al. (2025) Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes. Nucleic Acids Research. 10.1093/nar/gkaf1283

Pereira, C. G. et al. (2025) Breeding of microbiomes conferring salt tolerance to plants. Microbiome. 10.1186/s40168-025-02261-0

Fonseca-García, C. et al. (2025) Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth. PLOS Biology. 10.1371/journal.pbio.3003526

Valenzuela, A. et al. (2025) Draft genome sequence of Muricoccus roseus DSM 14916T, isolated from a children’s care center in Finland. Microbiology Resource Announcements. 10.1128/mra.00891-25

Bader, C. D. et al. (2025) Discovery of 5‑Chlorotryptophan-Containing Antibiotics through Metabologenomics-Assisted High-Throughput Screening. JACS Au. 10.1021/jacsau.5c01236

Schulz, F. et al. (2025) Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae. Nature Communications. 10.1038/s41467-025-65263-4

Lax, C. et al. (2025) Unveiling a pervasive DNA adenine methylation regulatory network in the early-diverging fungus Rhizopus microsporus. Nature Communications. 10.1038/s41467-025-65177-1

Berg, M. et al. (2025) Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations. NAR Genomics and Bioinformatics. 10.1093/nargab/lqaf163

Laperriere, S. M. et al. (2025) Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series. ISME Communications. 10.1093/ismeco/ycaf217

Kruse, C. P. et al. (2025) A multi-omic characterization of the physiological responses to salt stress in Scenedesmus obliquus UTEX393. Communications Biology. 10.1038/s42003-025-09016-5

Gamba, D. et al. (2025) Local adaptation to climate has facilitated the global invasion of cheatgrass. Nature Communications. 10.1038/s41467-025-64799-9

Zecua-Ramirez, P. et al. (2025) Autophagy restricts symbiosis-associated cell death and regulates colonization by Serendipita indica in Arabidopsis. Plant Physiology. 10.1093/plphys/kiaf590