Publications
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Metagenome
Viral
Coclet, C. et al. (2024) MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.. mSystems. 10.1128/msystems.00888-24
Metagenome
BER Support Science
EMSL FICUS
Freire-Zapata, V. et al. (2024) Microbiome–metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient. Nature Microbiology. 10.1038/s41564-024-01800-z
Data Science & Informatics
Amusat, O. O. et al. (2024) Automated annotation of scientific texts for ML-based keyphrase extraction and validation. Database. 10.1093/database/baae093
Metagenome
Microbial
Community Science Program
Dopson, M. et al. (2024) Novel candidate taxa contribute to key metabolic processes in Fennoscandian shield deep groundwaters. ISME Communications. 10.1093/ismeco/ycae113
Metabolomics
Pakkir Shah, A. K. et al. (2024) Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data. Nature Protocols. 10.1038/s41596-024-01046-3
Plant
Community Science Program
Community Science Program
Espina, M. J. et al. (2024) Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. The Plant Journal. 10.1111/tpj.17026
Fungal & Algal
Genomic Technologies
Plant
Community Science Program
Bioenergy Research Centers
Community Science Program
EMSL FICUS
Steindorff, A. S. et al. (2024) Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses. Communications Biology. 10.1038/s42003-024-06681-w
Genomic Technologies
Metagenome
Community Science Program
Robinson, D. et al. (2024) Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes. Frontiers in Microbiology. 10.3389/fmicb.2024.1422941
Metabolomics
Community Science Program
Bayer, B. et al. (2024) Metabolite release by nitrifiers facilitates metabolic interactions in the ocean. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1093/ismejo/wrae172
Fungal & Algal
Genomic Technologies
Community Science Program
Gomez-Gutierrrez, S. V. et al. (2024) Comparative genomics of the extremophile Cryomyces antarcticus and other psychrophilic Dothideomycetes. Frontiers in Fungal Biology. 10.3389/ffunb.2024.1418145
Fungal & Algal
Genomic Technologies
Community Science Program
van Ingen-Buijs, V. A. et al. (2024) Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. citricarpa based on phylogenomic analyses. Fungal Genetics and Biology. 10.1016/j.fgb.2024.103925
Fungal & Algal
Genomic Technologies
Community Science Program
Freyria, N. J. et al. (2024) Stress responses in an Arctic microalga (Pelagophyceae) following sudden salinity change revealed by gene expression analysis. Communications Biology. 10.1038/s42003-024-06765-7
