Publications

Sorensen, P. O. et al. (2026) Multi-omics reveals nitrogen dynamics associated with soil microbial blooms during snowmelt. Nature Microbiology. 10.1038/s41564-025-02213-2

Shi, L. et al. (2026) Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling. Nature Communications. 10.1038/s41467-026-68640-9

DeChellis, A. et al. (2026) There is an “I” in team: individual improvements in supercharged cellulase cocktail facilitates cooperative cellulose degradation. Biotechnology for Biofuels and Bioproducts. 10.1186/s13068-026-02740-y

Draisma, A. et al. (2026) BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters. Nature Communications. 10.1038/s41467-026-68733-5

Turumtay, H. et al. (2026) Engineered Production of Hydroxycinnamoyl Tyramine Conjugates Limits the Growth of the Pathogen Pseudomonas syringae in Arabidopsis. Plant Cell & Environment. 10.1111/pce.70403

Dauphin, B. et al. (2026) Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism. Genome Biology and Evolution. 10.1093/gbe/evag017

Karatzas, E. et al. (2026) nf-core/proteinfamilies: a scalable pipeline for the generation of protein families. GigaScience. 10.1093/gigascience/giag009

Meagher, M. et al. (2026) Investigating overflow metabolism in heterotrophic cultures of the green alga Chromochloris zofingiensis. Metabolic Engineering. 10.1016/j.ymben.2026.01.007

Ahrendt, S. et al. (2026) Comparative mitogenomics of kingdom Fungi – evolutionary insights and metagenomic applications. Nucleic Acids Research. 10.1093/nar/gkaf1419

Sakkos, A. et al. (2026) Agnostic capture of pathogens for the detection and diagnostics of emerging threats. iScience. 10.1016/j.isci.2026.114684

Sari, E. et al. (2026) Gene duplication, horizontal gene transfer, and trait trade-offs drive evolution of postfire resource acquisition in pyrophilous fungi. Proceedings of the National Academy of Sciences of the United States of America. 10.1073/pnas.2519152123

Birzu, G. et al. (2025) Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population. eLife. 10.7554/elife.90849