Publications

Simpson, A. M. R. et al. (2024) MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment. GigaScience. 10.1093/gigascience/giae071

Grosjean, N. et al. (2024) Functional diversification within the heme-binding split-barrel family. Journal of Biological Chemistry. 10.1016/j.jbc.2024.107888

Roux, S. et al. (2024) Tapping the treasure trove of atypical phages. Current Opinion in Microbiology. 10.1016/j.mib.2024.102555

Bessenay, A. et al. (2024) Complex transcriptional regulations of a hyperparasitic quadripartite system in giant viruses infecting protists. Nature Communications. 10.1038/s41467-024-52906-1

Dooley, D. et al. (2024) Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars. mSystems. 10.1128/msystems.00952-24

Klimasmith, I. M. et al. (2024) Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction. Frontiers in Microbiomes. 10.3389/frmbi.2024.1452476

Freire-Zapata, V. et al. (2024) Microbiome–metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient. Nature Microbiology. 10.1038/s41564-024-01800-z

Coclet, C. et al. (2024) MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.. mSystems. 10.1128/msystems.00888-24

Amusat, O. O. et al. (2024) Automated annotation of scientific texts for ML-based keyphrase extraction and validation. Database. 10.1093/database/baae093

Dopson, M. et al. (2024) Novel candidate taxa contribute to key metabolic processes in Fennoscandian shield deep groundwaters. ISME Communications. 10.1093/ismeco/ycae113

Pakkir Shah, A. K. et al. (2024) Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data. Nature Protocols. 10.1038/s41596-024-01046-3

Espina, M. J. et al. (2024) Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. The Plant Journal. 10.1111/tpj.17026