Publications

Paton, A. E. et al. (2025) Connecting chemical and protein sequence space to predict biocatalytic reactions. Nature. 10.1038/s41586-025-09519-5

Fu, J. et al. (2025) Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum. BMC Plant Biology. 10.1186/s12870-025-07303-1

Ebot-Ojong, F. et al. (2025) HISTONE DEACETYLASE-1 is required for epigenome stability in Neurospora crassa.. Proceedings of the National Academy of Sciences of the United States of America. 10.1073/pnas.2503876122

Füssy, Z. et al. (2025) Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae. Nature Communications. 10.1038/s41467-025-63565-1

Hug, L. A. et al. (2025) A roadmap for equitable reuse of public microbiome data. Nature Microbiology. 10.1038/s41564-025-02116-2

Rio, S. et al. (2025) HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids. Peer Community Journal. 10.24072/pcjournal.631

Buser‐Young, J. Z. et al. (2025) Megathrust Earthquake Legacy Linked to Changes in Widespread Potential for Methane and Iron Cycling in Glaciated Wetlands. AGU Advances. 10.1029/2025av001821

Kimball-Rhines, C. et al. (2025) The annotated, chromosome-scale Salicornia depressa (American pickleweed) genome. Journal of Heredity. 10.1093/jhered/esaf062

Kivimaki, S. E. et al. (2025) Type IV Pili‐Associated Secretion of a Biofilm Matrix Protein From Clostridium perfringens That Forms Intermolecular Isopeptide Bonds. Molecular Microbiology. 10.1111/mmi.70020

Alsup, T. A. et al. (2025) Discovery of UbiA-Type Cyathane Synthases in Bacteria. ACS Catalysis. 10.1021/acscatal.5c04650

Lapalu, N. et al. (2025) Improved Gene Annotation of the Fungal Wheat Pathogen Zymoseptoria tritici Based on Combined Iso-Seq and RNA-Seq Evidence.. Molecular Plant-Microbe Interactions. 10.1094/mpmi-07-25-0077-ta

Barriga, M. P. et al. (2025) Chaparral wildfire shifts the functional potential for soil pyrogenic organic matter and nitrogen cycling. Soil Biology and Biochemistry. 10.1016/j.soilbio.2025.109985