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Berkeley Lab Seeking Licensees in GenomeWeb

“This is a general method to get DNA out from any kind of sample, but with higher sensitivity, we think, than current methods, and more … versatility in terms of product models,” Youn-Hi Woo, a staff scientist at Berkeley Lab and one of the method’s inventors, told PCR Insider this week.”  Read more on GenomeWeb (subscription may… [Read More]

A new approach for improve genome assembly

Assembling a genome from fragments of DNA sequence is often compared to assembling a puzzle. One of the problems researchers face with the increasing use of next-generation sequencing technologies is that the pieces of DNA sequence generated by the 454 or Illumina platforms are much smaller and far more numerous than those produced by the… [Read More]

Permafrost study referenced in ScienceNews

In Nature in December, a team of researchers at the Department of Energy’s Joint Genome Institute in Walnut Creek, Calif., and colleagues reported one such microbe’s draft genome — put together from DNA acquired from the semifrozen dirt in an Alaskan black spruce forest. The Alaskan microbe carries genes tuned to transform organic matter into methane, a finding that… [Read More]

Permafrost metagenome study on VOA Special English report

The researchers say one gram of the soil could contain thousands of different kinds of microbes and billions of cells. They say these organisms had never before been cultured in a laboratory. JANET JANSSON:  “So more than ninety percent of those bacteria and other microorganisms in permafrost, we had no idea what they were.” Read… [Read More]

Permafrost soil metagenome study in UK Press Association

At the testing laboratories, US researchers extracted almost 40 billion elements of raw DNA, reflecting high microbial diversity in the soil.The scientists were also able to piece together the genetic code, or genome, of a previously unknown methane-producing “methanogen” that was present in large numbers. Reporting their findings in an early online edition of the journal… [Read More]

Permafrost soil metagenome study in GenomeWeb

“Currently in climate models, it’s not really taken into account adequately what the microorganisms are doing,” senior author Janet Jansson, a researcher affiliated with the Lawrence Berkeley National Laboratory and the US Department of Energy’s Joint Genome Institute, told GenomeWeb Daily News. “The hope is to get enough information at the microscopic level that we’ll have… [Read More]

Berkeley Lab Open House recap on Today at Berkeley Lab

At DOE JGI’s metagenomics of restored wetlands exhibit Most notable among the crowd of thousands was the number of youngsters who were in attendance. Families were enthralled by the terrific science, engineering, and operations efforts presented at the various booths. Read more at Today at Berkeley Lab [Read More]

Of Soil Carbon and Climate Change

Thanks to genome sequencing techniques such as those at the Department of Energy’s Joint Genome Institute in Walnut Creek, California, we now have a much better idea of what microbes are in soil, what they’re doing, and what proteins they’re producing. That’s important, because a handful of soil can teem with millions of microbes, some… [Read More]

DOE JGI/JBEI collaboration in DomesticFuels.com

Researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Joint BioEnergy Institute (JBEI) at DOE’s Lawrence Berkeley National Laboratory are trying to discover salt-loving organisms that may be more efficient in treating biomass and improve sugar yield for biofuel production. The class of solvents known as ionic liquids, are liquid forms of salt that… [Read More]

JGI Science @ the Lesher: “The Deal with Microbes” video

The May 9, 2011 event at the Lesher Center for the Arts in downtown Walnut Creek featured Jonathan Eisen and Rachel Mackelprang of DOE JGI, and Terry Hazen of Berkeley Lab. KTVU Health and Science Editor John Fowler served as panel moderator. (Note: There’s a short delay before the video starts at the 20-second mark.)… [Read More]