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… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the … The Metagenome Program focuses on the high-throughput sequencing …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … applications. By recovering population genomes from metagenomes, we gain insights into microbial interactions, …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy …

… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding … the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … samples — including microbes, fungi, plants and soils. Through a combination of experimental workflows and …

… ALISON TAKEMURA: So Nadine, what got you interested in studying natural products? NADINE ZIEMERT: Like almost … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot … of these environments? NADINE ZIEMERT: So we started with soil. But we also have, in collaboration with other people, …

… like, and then you could characterize it. The classical study that demonstrated this is Challis et al, Chemistry and … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and …

… is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and College of … And for the audience, ethnobotany is the scientific study of the ways that people interact with plants, whether … and culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or …

… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … And these were not in natural products, these were in studying regulatory mechanisms of, first, E. coli and then … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … of how plants have naturally adapted to varied climate and soil conditions around the globe to identify genes to …

… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … Genomics group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics …

… and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … Exploring the fascinating world of giant viruses, which challenge …