2017 Pubs - DOE Joint Genome Institute

Ahn, A. C. et al. (2017) Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS One 12(3), e0173517. 10.1371/journal.pone.0173517
Ai, C. et al. (2017) Evolution of copper arsenate resistance for enhanced enargite bioleaching using the extreme thermoacidophile Metallosphaera sedula. J Ind Microbiol Biotechnol 44(12), 1613-1625. 10.1007/s10295-017-1973-5
Aime, M. C. et al. (2017) Phylogenetics and Phylogenomics of Rust Fungi. Adv Genet 100, 267-307. 10.1016/bs.adgen.2017.09.011
Amos, G. C. A. et al. (2017) Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality. Proc Natl Acad Sci U S A 114(52), E11121-E11130. 10.1073/pnas.1714381115
Andreopoulos, Bill et al. (2017) Clustering Categorical Data. Wiley StatsRef: Statistics Reference Online . 10.1002/9781118445112.stat07907
Angle, J. C. et al. (2017) Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions. Nat Commun 8(1), 1567. 10.1038/s41467-017-01753-4
Aserse, A. A. et al. (2017) Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov. Stand Genomic Sci 12, 14. 10.1186/s40793-017-0220-z
Aserse, A. A. et al. (2017) Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11(T) and Bradyrhizobium yuanmingense CCBAU 10071(T). Stand Genomic Sci 12, 74. 10.1186/s40793-017-0283-x
Baltrus, D. A. et al. (2017) Absence of genome reduction in diverse, facultative endohyphal bacteria. Microb Genom 3(2), e000101. 10.1099/mgen.0.000101
Becraft, E. D. et al. (2017) Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla. Front Microbiol 8, 2264. 10.3389/fmicb.2017.02264
Becraft, E. D. et al. (2017) Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs. Front Microbiol 8, 2082. 10.3389/fmicb.2017.02082
Beukes, C. W. et al. (2017) Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato. Front Microbiol 8, 1154. 10.3389/fmicb.2017.01154
Blanc-Mathieu, R. et al. (2017) Population genomics of picophytoplankton unveils novel chromosome hypervariability. Sci Adv 3(7), e1700239. 10.1126/sciadv.1700239
Booker, A. E. et al. (2017) Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales. mSphere 2(4). 10.1128/mSphereDirect.00257-17
Bowers, R. M. et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol 35(8), 725-731. 10.1038/nbt.3893
Bowers, R. M. et al. (2017) Sequencing of Genomes from Environmental Single Cells. Methods Mol Biol 1712, 97-111. 10.1007/978-1-4939-7514-3_8
Bowman, J. L. et al. (2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell 171(2), 287-304 e15. 10.1016/j.cell.2017.09.030
Brawley, S. H. et al. (2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proc Natl Acad Sci U S A 114(31), E6361-E6370. 10.1073/pnas.1703088114
Browne, D. R. et al. (2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa). Genome Announc 5(16). 10.1128/genomeA.00215-17
Browne, D. R. et al. (2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa). Genome Announc 5(16). 10.1128/genomeA.00215-17
Browne, P. et al. (2017) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. ISME J 11(1), 87-99. 10.1038/ismej.2016.104
Bushnell, B. et al. (2017) BBMerge – Accurate paired shotgun read merging via overlap. PLoS One 12(10), e0185056. 10.1371/journal.pone.0185056
Castanera, R. et al. (2017) Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales. BMC Genomics 18(1), 883. 10.1186/s12864-017-4243-z
Ceballos, S. J. et al. (2017) Development and characterization of a thermophilic, lignin degrading microbiota. Process Biochemistry 63, 193-203. 10.1016/j.procbio.2017.08.018
Chen, I. A. et al. (2017) IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res 45(D1), D507-D516. 10.1093/nar/gkw929
Chen, L. X. et al. (2017) Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. ISME J . 10.1038/s41396-017-0002-z
Choi, D. H. et al. (2017) Draft genome sequence of Marinobacterium rhizophilum CL-YJ9(T) (DSM 18822(T)), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica. Stand Genomic Sci 12, 65. 10.1186/s40793-017-0275-x
Cobo-Diaz, J. F. et al. (2017) Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains. Forests 8(10). 10.3390/f8100390
Cole, B. J. et al. (2017) Genome-wide identification of bacterial plant colonization genes. PLoS Biol 15(9), e2002860. 10.1371/journal.pbio.2002860
Coninx, L. et al. (2017) The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus. Front Microbiol 8, 2320. 10.3389/fmicb.2017.02320
Contreras-Moreira, B. et al. (2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. Front Plant Sci 8, 184. 10.3389/fpls.2017.00184
D’Haeseleer, P. et al. (2017) Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate. Stand Genomic Sci 12, 67. 10.1186/s40793-017-0279-6
D’Souza, M. et al. (2017) Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks. Methods Mol Biol 1613, 85-99. 10.1007/978-1-4939-7027-8_5
Daly, P. et al. (2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments. Biotechnol Biofuels 10, 35. 10.1186/s13068-017-0700-9
Danby, Phillip M. et al. (2017) Glycosyl Cations versus Allylic Cations in Spontaneous and Enzymatic Hydrolysis. Journal of the American Chemical Society 139(31), 10629-10632. 10.1021/jacs.7b05628
de Matos, G. F. et al. (2017) Bradyrhizobium sacchari sp. nov., a legume nodulating bacterium isolated from sugarcane roots. Arch Microbiol 199(9), 1251-1258. 10.1007/s00203-017-1398-6
de Raad, M. et al. (2017) OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging. Anal Chem 89(11), 5818-5823. 10.1021/acs.analchem.6b05004
de Rond, T. et al. (2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme. Nat Chem Biol . 10.1038/nchembio.2471
de Rond, T. et al. (2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme. Nat Chem Biol 13(11), 1155-1157. 10.1038/nchembio.2471
de Vries, R. P. et al. (2017) Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol 18(1), 28. 10.1186/s13059-017-1151-0
Diaz-Cardenas, C. et al. (2017) Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring. Int J Syst Evol Microbiol . 10.1099/ijsem.0.002185
Diaz-Cardenas, C. et al. (2017) Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565(T) an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring. Stand Genomic Sci 12, 86. 10.1186/s40793-017-0303-x
Ding, Y. et al. (2017) Selinene Volatiles Are Essential Precursors for Maize Defense Promoting Fungal Pathogen Resistance. Plant Physiol 175(3), 1455-1468. 10.1104/pp.17.00879
Dore, J. et al. (2017) The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environ Microbiol 19(3), 1338-1354. 10.1111/1462-2920.13670
Dossani, Z. Y. et al. (2017) A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering. Yeast . 10.1002/yea.3292
Doud, D. F. R. et al. (2017) Novel approaches in function-driven single-cell genomics. FEMS Microbiol Rev . 10.1093/femsre/fux009
Doud, D. F. R. et al. (2017) Novel approaches in function-driven single-cell genomics. FEMS Microbiol Rev . 10.1093/femsre/fux009
Eminoglu, A. et al. (2017) Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria. Biotechnol Biofuels 10, 282. 10.1186/s13068-017-0968-9
Fernandez-Bayo, J. D. et al. (2017) Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity. Applied Soil Ecology 119, 183-191. 10.1016/j.apsoil.2017.06.016
Fernandez-Gonzalez, A. J. et al. (2017) The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils. Sci Rep 7(1), 6008. 10.1038/s41598-017-06112-3
Fochi, V. et al. (2017) Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas. New Phytol 213(1), 365-379. 10.1111/nph.14279
Frindte, K. et al. (2017) Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems. Genome Announc 5(33). 10.1128/genomeA.00526-17
Gach, P. C. et al. (2017) Droplet microfluidics for synthetic biology. Lab Chip . 10.1039/c7lc00576h
Garcia, S. L. et al. (2017) Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations. ISME J . 10.1038/s41396-017-0001-0
Gasch, A. P. et al. (2017) Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. PLoS Biol 15(12), e2004050. 10.1371/journal.pbio.2004050
Gaskell, J. et al. (2017) Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genom Data 14, 21-23. 10.1016/j.gdata.2017.08.003
Gilbert, R. A. et al. (2017) Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria. Front Microbiol 8, 2340. 10.3389/fmicb.2017.02340
Gontang, E. A. et al. (2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. PLoS One 12(5), e0177189. 10.1371/journal.pone.0177189
Gontang, E. A. et al. (2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. PLoS One 12(5), e0177189. 10.1371/journal.pone.0177189
Gordon, S. P. et al. (2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nat Commun 8(1), 2184. 10.1038/s41467-017-02292-8
Gordon, S. P. et al. (2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nat Commun 8(1), 2184. 10.1038/s41467-017-02292-8
Gutierrez, T. et al. (2017) Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample. Genome Announc 5(32). 10.1128/genomeA.00796-17
Gutierrez, T. et al. (2017) Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast. Genome Announc 5(35). 10.1128/genomeA.00837-17
Hadjithomas, M. et al. (2017) IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res 45(D1), D560-D565. 10.1093/nar/gkw1103
Hahn, M. W. et al. (2017) Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov. Int J Syst Evol Microbiol . 10.1099/ijsem.0.002421
Haitjema, C. H. et al. (2017) A parts list for fungal cellulosomes revealed by comparative genomics. Nat Microbiol 2, 17087. 10.1038/nmicrobiol.2017.87
Haitjema, C. H. et al. (2017) A parts list for fungal cellulosomes revealed by comparative genomics. Nat Microbiol 2, 17087. 10.1038/nmicrobiol.2017.87
Hamilton, J. J. et al. (2017) Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI. mSystems 2(4). 10.1128/mSystems.00091-17
Harrington, L. B. et al. (2017) A thermostable Cas9 with increased lifetime in human plasma. Nat Commun 8(1), 1424. 10.1038/s41467-017-01408-4
Hartman, W. H. et al. (2017) A genomic perspective on stoichiometric regulation of soil carbon cycling. ISME J . 10.1038/ismej.2017.115
Hawley, A. K. et al. (2017) A compendium of multi-omic sequence information from the Saanich Inlet water column. Sci Data 4, 170160. 10.1038/sdata.2017.160
Hawley, A. K. et al. (2017) Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients. Nat Commun 8(1), 1507. 10.1038/s41467-017-01376-9
He, S. et al. (2017) Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes. mSphere 2(5). 10.1128/mSphere.00277-17
Herbold, C. W. et al. (2017) Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. Environmental Microbiology 19(12), 4939-4952. 10.1111/1462-2920.13971
Hossain, M. S. et al. (2017) Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. New Phytol 214(2), 808-819. 10.1111/nph.14421
Hsia, M. M. et al. (2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant J . 10.1111/tpj.13582
Hsia, M. M. et al. (2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant J . 10.1111/tpj.13582
Hu, P. et al. (2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proc Natl Acad Sci U S A . 10.1073/pnas.1703424114
Hu, P. et al. (2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proc Natl Acad Sci U S A 114(28), 7432-7437. 10.1073/pnas.1703424114
Huang, Pu et al. (2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize. Nat Plants 3, 17054. 10.1038/nplants.2017.54 https://www.nature.com/articles/nplants201754#supplementary-information
Huang, Pu et al. (2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize. Nat Plants 3, 17054. 10.1038/nplants.2017.54 https://www.nature.com/articles/nplants201754#supplementary-information
Hutt, L. P. et al. (2017) Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria. Stand Genomic Sci 12, 10. 10.1186/s40793-017-0229-3
Jennings, R. M. et al. (2017) Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities. Front Microbiol 8, 88. 10.3389/fmicb.2017.00088
Jiao, J. Y. et al. (2017) Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds. Stand Genomic Sci 12, 21. 10.1186/s40793-017-0226-6
Jimenez, D. J. et al. (2017) Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates. Genome Announc 5(4). 10.1128/genomeA.01476-16
Jungbluth, S. P. et al. (2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems. PeerJ 5, e3134. 10.7717/peerj.3134
Jungbluth, S. P. et al. (2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems. PeerJ 5, e3134. 10.7717/peerj.3134
Kamke, J. et al. (2017) Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep. BMC Res Notes 10(1), 367. 10.1186/s13104-017-2671-0
Kantor, R. S. et al. (2017) Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation. Environ Sci Technol 51(5), 2944-2953. 10.1021/acs.est.6b04477
Khdhiri, M. et al. (2017) The tale of a neglected energy source: Elevated hydrogen exposure affects both microbial diversity and function in soil. Appl Environ Microbiol 83(11). 10.1128/AEM.00275-17
Klonowska, A. et al. (2017) High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia. Stand Genomic Sci 12, 7. 10.1186/s40793-016-0212-4
Kruse, T. et al. (2017) Comparative genomics of the genus Desulfitobacterium. FEMS Microbiol Ecol 93(12). 10.1093/femsec/fix135
Kublanov, I. V. et al. (2017) Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota. Front Microbiol 8, 195. 10.3389/fmicb.2017.00195
Lamit, L. J. et al. (2017) Patterns and drivers of fungal community depth stratification in Sphagnum peat. FEMS Microbiol Ecol 93(7). 10.1093/femsec/fix082
Lang, D. et al. (2017) The P. patens chromosome-scale assembly reveals moss genome structure and evolution. Plant J . 10.1111/tpj.13801
Laviad-Shitrit, S. et al. (2017) High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk. Stand Genomic Sci 12, 31. 10.1186/s40793-017-0242-6
Laviad-Shitrit, S. et al. (2017) High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk. Stand Genomic Sci 12, 31. 10.1186/s40793-017-0242-6
Lee, C-R. et al. (2017) Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution 1, 0119. 10.1038/s41559-017-0119
Li, G. et al. (2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies. Plant Cell 29(6), 1218-1231. 10.1105/tpc.17.00154
Li, G. et al. (2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies. Plant Cell 29(6), 1218-1231. 10.1105/tpc.17.00154
Li, H. et al. (2017) Lignocellulose pretreatment in a fungus-cultivating termite. Proc Natl Acad Sci U S A 114(18), 4709-4714. 10.1073/pnas.1618360114
Li, H. et al. (2017) Lignocellulose pretreatment in a fungus-cultivating termite. Proc Natl Acad Sci U S A 114(18), 4709-4714. 10.1073/pnas.1618360114
Liu, J. et al. (2017) Novel reductive dehalogenases from the marine sponge associated bacterium Desulfoluna spongiiphila. Environ Microbiol Rep 9(5), 537-549. 10.1111/1758-2229.12556
Lopez, G. et al. (2017) Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes. Stand Genomic Sci 12, 78. 10.1186/s40793-017-0292-9
Magain, N. et al. (2017) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon. Mol Phylogenet Evol . 10.1016/j.ympev.2017.08.013
Magain, N. et al. (2017) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen -forming genus Peltigera section Polydactylon. Molecular Phylogenetics and Evolution 117, 10-29. 10.1016/j.ympev.2017.08.013
Mansueto, L. et al. (2017) Rice SNP-seek database update: new SNPs, indels, and queries. Nucleic Acids Res 45(D1), D1075-D1081. 10.1093/nar/gkw1135
Masumba, E. A. et al. (2017) QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert. Theor Appl Genet . 10.1007/s00122-017-2943-z
Matrosova, V. Y. et al. (2017) High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460. Stand Genomic Sci 12, 46. 10.1186/s40793-017-0258-y
McCormick, R. F. et al. (2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization. Plant J . 10.1111/tpj.13781
McCormick, R. F. et al. (2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization. Plant J . 10.1111/tpj.13781
Mei, R. et al. (2017) Operation-driven heterogeneity and overlooked feed-associated populations in global anaerobic digester microbiome. Water Res 124, 77-84. 10.1016/j.watres.2017.07.050
Melton, E. D. et al. (2017) Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile. Stand Genomic Sci 12, 57. 10.1186/s40793-017-0268-9
Men, Y. et al. (2017) Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition. Appl Environ Microbiol . 10.1128/AEM.03508-16
Meyer, K. M. et al. (2017) Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms. Mol Ecol 26(6), 1547-1556. 10.1111/mec.14011
Min, B. et al. (2017) FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation. Bioinformatics . 10.1093/bioinformatics/btx353
Miroshnikov, K. K. et al. (2017) Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil. Genome Announc 5(24). 10.1128/genomeA.00504-17
Miroshnikov, K. K. et al. (2017) Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil. Genome Announc 5(24). 10.1128/genomeA.00504-17
Mock, T. et al. (2017) Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature 541(7638), 536-540. 10.1038/nature20803
Mondo, S. J. et al. (2017) Widespread adenine N6-methylation of active genes in fungi. Nat Genet 49(6), 964-968. 10.1038/ng.3859
Mondo, S. J. et al. (2017) Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi. Nat Commun 8(1), 1843. 10.1038/s41467-017-02052-8
Montero-Calasanz, M. D. C. et al. (2017) Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae. Front Microbiol 8, 2501. 10.3389/fmicb.2017.02501
Montero-Calasanz, M. D. C. et al. (2017) Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae. Front Microbiol 8, 2501. 10.3389/fmicb.2017.02501
Moraes, L. E. et al. (2017) Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production. AMB Express 7(1), 42. 10.1186/s13568-017-0338-9
Morrell, W. C. et al. (2017) The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization. ACS Synth Biol . 10.1021/acssynbio.7b00204
Mujic, A. B. et al. (2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus. G3 (Bethesda) 7(6), 1775-1789. 10.1534/g3.117.039396
Mujic, A. B. et al. (2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus. G3 (Bethesda) 7(6), 1775-1789. 10.1534/g3.117.039396
Mukai, T. et al. (2017) RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea. MBio 8(3). 10.1128/mBio.00561-17
Mukai, T. et al. (2017) RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea. MBio 8(3). 10.1128/mBio.00561-17
Mukherjee, S. et al. (2017) Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. Nucleic Acids Res 45(D1), D446-D456. 10.1093/nar/gkw992
Mukherjee, S. et al. (2017) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nat Biotechnol . 10.1038/nbt.3886
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