2013 Pubs - DOE Joint Genome Institute

Abt, B. et al. (2013) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8(1), 88-105. 10.4056/sigs.3096473
Allers, E. et al. (2013) Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean. ISME J 7(2), 256-68. 10.1038/ismej.2012.108
Anderson, I. et al. (2013) Genome sequence of Frateuria aurantia type strain (Kondo 67(T)), a xanthomonade isolated from Lilium auratium Lindl. Stand Genomic Sci 9(1), 83-92. 10.4056/sigs.4338002
Appel, A. M. et al. (2013) Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO Fixation. Chem Rev . 10.1021/cr300463y
Aylward, F. O. et al. (2013) Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Appl Environ Microbiol 79(12), 3770-8. 10.1128/AEM.03833-12
Aylward, F. O. et al. (2013) Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities. Appl Environ Microbiol 79(12), 3724-33. 10.1128/AEM.00518-13
Aylward, F. O. et al. (2013) Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announc 1(1). 10.1128/genomeA.00238-12
Aylward, F. O. et al. (2013) Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announc 1(2), e0023912. 10.1128/genomeA.00239-12
Baran, R. et al. (2013) Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics. Mar Drugs 11(10), 3617-3631. 10.3390/md11103617
Barling, A. et al. (2013) A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes. BMC Genomics 14, 864. 10.1186/1471-2164-14-864
Barriuso, J. et al. (2013) Fungal genomes mining to discover novel sterol esterases and lipases as catalysts. BMC Genomics 14, 712. 10.1186/1471-2164-14-712
Beck, D. A. et al. (2013) A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae. PeerJ 1, e23. 10.7717/peerj.23
Bendall, M. L. et al. (2013) Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. J Bacteriol . 10.1128/JB.00935-13
Beyersmann, Paul et al. (2013) Genome sequence of Phaeobacter caeruleus type strain (DSM 24564 T ), a surface-associated member of the marine Roseobacter clade. Stand Genomic Sci 8(3). 10.4056/sigs.3927623
Binder, M. et al. (2013) Phylogenetic and Phylogenomic overview of the Polyporales. Mycologia . 10.3852/13-003
Bollmann, A. et al. (2013) Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. Stand Genomic Sci 7(3), 469-82. 10.4056/sigs.3517166
Boscaro, V. et al. (2013) Polynucleobacter necessarius, a model for genome reduction in both free-living and symbiotic bacteria. Proc Natl Acad Sci U S A 110(46), 18590-5. 10.1073/pnas.1316687110
Bradnam, K. R. et al. (2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience 2(1), 10. 10.1186/2047-217X-2-10
Brown, S. D. et al. (2013) Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives. Genome Announc 1(3). 10.1128/genomeA.00323-13
Buddruhs, N. et al. (2013) Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade. Stand Genomic Sci 9(1), 128-41. 10.4056/sigs.4297965
Burow, L. C. et al. (2013) Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. ISME J 7(4), 817-29. 10.1038/ismej.2012.150
Busquets, A. et al. (2013) Draft Genome Sequence of Pseudomonas azotifigens Strain DSM 17556T (6H33bT), a Nitrogen Fixer Strain Isolated from a Compost Pile. Genome Announc 1(6). 10.1128/genomeA.00893-13
Cai, F. et al. (2013) Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria. RNA Biol 10(5), 687-93. 10.4161/rna.24571
Cai, F. et al. (2013) The structure of CcmP, a tandem bacterial microcompartment domain protein from the beta-carboxysome, forms a subcompartment within a microcompartment. J Biol Chem 288(22), 16055-63. 10.1074/jbc.M113.456897
Cameron, J. C. et al. (2013) Biogenesis of a bacterial organelle: the carboxysome assembly pathway. Cell 155(5), 1131-40. 10.1016/j.cell.2013.10.044
Campbell, J. H. et al. (2013) UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proc Natl Acad Sci U S A 110(14), 5540-5. 10.1073/pnas.1303090110
Castelle, C. J. et al. (2013) Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nat Commun 4, 2120. 10.1038/ncomms3120
Challacombe, J. F. et al. (2013) Complete genome sequence of Halorhodospira halophila SL1. Stand Genomic Sci 8(2), 206-14. 10.4056/sigs.3677284
Chen, B. S. et al. (2013) Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895. Stand Genomic Sci 9(1), 175-84. 10.4056/sigs.4418165
Chen, I. M. et al. (2013) Improving microbial genome annotations in an integrated database context. PLoS One 8(2), e54859. 10.1371/journal.pone.0054859
Chin, C. S. et al. (2013) Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10(6), 563-9. 10.1038/nmeth.2474
Cho, Y. et al. (2013) Fungal-specific transcription factor AbPf2 activates pathogenicity in Alternaria brassicicola. Plant J 75(3), 498-514. 10.1111/tpj.12217
Choi, D. H. et al. (2013) Draft genome sequence of Rubidibacter lacunae strain KORDI 51-2(T), a cyanobacterium isolated from seawater of Chuuk lagoon. Stand Genomic Sci 9(1), 197-204. 10.4056/sigs.4398180
Cipriano, M. J. et al. (2013) RegTransBase–a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 14, 213. 10.1186/1471-2164-14-213
Clark, S. C. et al. (2013) ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. Bioinformatics 29(4), 435-43. 10.1093/bioinformatics/bts723
Clingenpeel, S. et al. (2013) Yellowstone lake nanoarchaeota. Front Microbiol 4, 274. 10.3389/fmicb.2013.00274
Cole, J. K. et al. (2013) Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities. ISME J 7(4), 718-29. 10.1038/ismej.2012.157
Condon, B. J. et al. (2013) Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens. PLoS Genet 9(1), e1003233. 10.1371/journal.pgen.1003233
D’Haeseleer, P. et al. (2013) Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass. PLoS One 8(7), e68465. 10.1371/journal.pone.0068465
Davis, J. R. et al. (2013) Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete. Genome Announc 1(4). 10.1128/genomeA.00416-13
DeMaere, M. Z. et al. (2013) High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake. Proc Natl Acad Sci U S A 110(42), 16939-44. 10.1073/pnas.1307090110
Deole, R. et al. (2013) An extremely halophilic proteobacterium combines a highly acidic proteome with a low cytoplasmic potassium content. J Biol Chem 288(1), 581-8. 10.1074/jbc.M112.420505
Dodsworth, J. A. et al. (2013) Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. Nat Commun 4, 1854. 10.1038/ncomms2884
Dogs, M. et al. (2013) Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. Stand Genomic Sci 9(1), 142-159. 10.4056/sigs.4287962
Dogs, M. et al. (2013) Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens. Stand Genomic Sci 9(2), 334-350. 10.4056/sigs.4448212
Dubchak, I. et al. (2013) Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data. Bioinformatics 29(16), 2059-61. 10.1093/bioinformatics/btt318
Elbir, H. et al. (2013) Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence. Stand Genomic Sci 9(1), 1-13. 10.4056/sigs.3748294
Elkins, J. G. et al. (2013) Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T. Genome Announc 1(2), e0016213. 10.1128/genomeA.00162-13
Emerson, D. et al. (2013) Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics. Front Microbiol 4, 254. 10.3389/fmicb.2013.00254
Everroad, R. C. et al. (2013) Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1. Genome Announc 1(4). 10.1128/genomeA.00527-13
Flowers, J. J. et al. (2013) Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal. ISME J . 10.1038/ismej.2013.117
Freese, H. M. et al. (2013) Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.). Stand Genomic Sci 8(3), 450-64. 10.4056/sigs.383362
Galardini, M. et al. (2013) Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58. Stand Genomic Sci 9(2), 325-33. 10.4056/sigs.3797438
Garcia, S. L. et al. (2013) Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. Isme Journal 7(1), 137-147. DOI 10.1038/ismej.2012.86
Geraldes, A. et al. (2013) A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species. Mol Ecol Resour 13(2), 306-23. 10.1111/1755-0998.12056
Ghodhbane-Gtari, F. et al. (2013) Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis. Genome Announc 1(2), e0008513. 10.1128/genomeA.00085-13
Gobler, C. J. et al. (2013) The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens. ISME J 7(7), 1333-43. 10.1038/ismej.2013.25
Gori, F. et al. (2013) Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes. BMC Genomics 14, 7. 10.1186/1471-2164-14-7
Gross, S. M. et al. (2013) De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics 14, 563. 10.1186/1471-2164-14-563
Han, J. I. et al. (2013) Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax paradoxus Strain EPS. Genome Announc 1(5). 10.1128/genomeA.00843-13
Harris, J. K. et al. (2013) Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME J 7(1), 50-60. 10.1038/ismej.2012.79
Hassani,, II et al. (2013) Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov. Stand Genomic Sci 9(1), 160-74. 10.4056/sigs.4578289
Haudry, A. et al. (2013) An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat Genet 45(8), 891-8. 10.1038/ng.2684
He, S. et al. (2013) Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites. PLoS One 8(4), e61126. 10.1371/journal.pone.0061126
Hellsten, U. et al. (2013) Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing. Proc Natl Acad Sci U S A 110(48), 19478-82. 10.1073/pnas.1319032110
Hemschemeier, A. et al. (2013) Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide. Proc Natl Acad Sci U S A 110(26), 10854-9. 10.1073/pnas.1302592110
Hirsch, A. M. et al. (2013) Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules. Genome Announc 1(5). 10.1128/genomeA.00759-13
Hug, L.A et al. (2013) Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome 1(1), 22. 10.1186/2049-2618-1-22.
Hunt, D. E. et al. (2013) Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters. Appl Environ Microbiol 79(1), 177-84. 10.1128/AEM.02155-12
Huntemann, M. et al. (2013) Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)). Stand Genomic Sci 8(2), 177-87. 10.4056/sigs.3637201
Hurwitz, B. L. et al. (2013) Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol 14(11), R123. 10.1186/gb-2013-14-11-r123
Hurwitz, B. L. et al. (2013) Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol 14(11), R123. 10.1186/gb-2013-14-11-r123
Inskeep, W. P. et al. (2013) Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry. Front Microbiol 4, 95. 10.3389/fmicb.2013.00095
Inskeep, W. P. et al. (2013) The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem. Front Microbiol 4, 67. 10.3389/fmicb.2013.00067
Iwata, A. et al. (2013) Identification and characterization of functional centromeres of the common bean. Plant J 76(1), 47-60. 10.1111/tpj.12269
Kamke, J. et al. (2013) Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges. ISME J 7(12), 2287-300. 10.1038/ismej.2013.111
Kazakov, A. E. et al. (2013) Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes. J Bacteriol 195(1), 29-38. 10.1128/JB.01977-12
Kazakov, A. E. et al. (2013) New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria. J Bacteriol 195(19), 4466-75. 10.1128/JB.00679-13
Kaznadzey, A. et al. (2013) PSimScan: algorithm and utility for fast protein similarity search. PLoS One 8(3), e58505. 10.1371/journal.pone.0058505
Keita, M. B. et al. (2013) Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov. Stand Genomic Sci 9(1), 93-105. 10.4056/sigs.4388124
Kerfeld, C. A. et al. (2013) Introduction: Sequences and consequences. Biochemistry and Molecular Biology Education 41(1), 12-15. Doi 10.1002/Bmb.20660
Kerfeld, C. A. et al. (2013) Structural, Mechanistic and Genomic Insights into OCP-Mediated Photoprotection. Genomics of Cyanobacteria 65, 1-26. Doi 10.1016/B978-0-12-394313-2.00001-9
Khanna, N. et al. (2013) Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production. Stand Genomic Sci 9(2), 359-69. 10.4056/sigs.4348035
Kirilovsky, D. et al. (2013) The Orange Carotenoid Protein: a blue-green light photoactive protein. Photochem Photobiol Sci 12(7), 1135-43. 10.1039/c3pp25406b
Kits, K. D. et al. (2013) Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8. Genome Announc 1(2), e0017013. 10.1128/genomeA.00170-13
Klatt, C. G. et al. (2013) Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments. Front Microbiol 4, 106. 10.3389/fmicb.2013.00106
Koike, H.; Aerts, A., LaButti, K.; Grigoriev, I.V.; Baker, S.E. et al. (2013) Comparative Genomics Analysis of Trichoderma reesei Strains . Industrial Biotechnology 9(6), 352-367. 10.1089/ind.2013.0015
Kozubal, M. A. et al. (2013) Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. ISME J 7(3), 622-34. 10.1038/ismej.2012.132
Kruse, Thomas et al. (2013) Complete genome sequence of Dehalobacter restrictus PER-K23 T. Stand Genomic Sci 8(3). 10.4056/sigs.3787426
Lindemann, S. R. et al. (2013) The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling. Front Microbiol 4, 323. 10.3389/fmicb.2013.00323
Lindemann, S. R. et al. (2013) The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling. Front Microbiol 4, 323. 10.3389/fmicb.2013.00323
Liolos, K. et al. (2013) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 8(2), 165-76. 10.4056/sigs.3607108
Lo, C. I. et al. (2013) Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov. Stand Genomic Sci 9(1), 14-27. 10.4056/sigs.4097825
Manning, V. A. et al. (2013) Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 (Bethesda) 3(1), 41-63. 10.1534/g3.112.004044
Mascher, M. et al. (2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J 76(4), 718-27. 10.1111/tpj.12319
Mavromatis, K. et al. (2013) Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)). Stand Genomic Sci 8(1), 47-57. 10.4056/sigs.3547050
Mavromatis, K. et al. (2013) Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)). Stand Genomic Sci 8(1), 26-36. 10.4056/sigs.3527032
Mediannikov, O. et al. (2013) Non-contiguous finished genome sequence and description of Bartonella florenciae sp. nov. Stand Genomic Sci 9(1), 185-96. 10.4056/sigs.4358060
Meier-Kolthoff, J. P. et al. (2013) Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)). Stand Genomic Sci 9(1), 28-41. 10.4056/sigs.4207886
Mishra, A. K. et al. (2013) Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov. Stand Genomic Sci 9(1), 205-19. 10.4056/sigs.4378121
Murugapiran, S. K. et al. (2013) Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin. Genome Announc 1(1). 10.1128/genomeA.00106-12
Nakatsu, C. H. et al. (2013) Complete genome sequence of Arthrobacter sp. strain FB24. Stand Genomic Sci 9(1), 106-16. 10.4056/sigs.4438185
Neupane, S. et al. (2013) Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4. Stand Genomic Sci 8(3), 441-9. 10.4056/sigs.4027757
Nordberg, H. et al. (2013) BioPig: A Hadoop-based Analytic Toolkit for Large-Scale Sequence Data. Bioinformatics . 10.1093/bioinformatics/btt528
Nouioui, I. et al. (2013) Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils. Genome Announc 1(4). 10.1128/genomeA.00468-13
Novichkov, P. S. et al. (2013) RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria. BMC Genomics 14, 745. 10.1186/1471-2164-14-745
Nurk, S. et al. (2013) Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. J Comput Biol 20(10), 714-37. 10.1089/cmb.2013.0084
Palaniappan, K. et al. (2013) Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Stand Genomic Sci 9(1), 57-70. 10.4056/sigs.4237901
Peacock, J. P. et al. (2013) Pyrosequencing reveals high-temperature cellulolytic microbial consortia in Great Boiling Spring after in situ lignocellulose enrichment. PLoS One 8(3), e59927. 10.1371/journal.pone.0059927
Peiffer, J. A. et al. (2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci U S A 110(16), 6548-53. 10.1073/pnas.1302837110
Pena-Montenegro, T. D. et al. (2013) Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31. Stand Genomic Sci 9(1), 42-56. 10.4056/sigs.4227894
Polivka, T. et al. (2013) Carotenoid-protein interaction alters the S(1) energy of hydroxyechinenone in the Orange Carotenoid Protein. Biochim Biophys Acta 1827(3), 248-54. 10.1016/j.bbabio.2012.10.005
Rajeev, L. et al. (2013) Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J . 10.1038/ismej.2013.83
Rawat, S. R. et al. (2013) Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil. Stand Genomic Sci 9(1), 71-82. 10.4056/sigs.4328031
Rawat, S. R. et al. (2013) Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil. Stand Genomic Sci 9(1), 71-82. 10.4056/sigs.4328031
Read, B. A. et al. (2013) Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature 499(7457), 209-13. 10.1038/nature12221
Reeve, W. et al. (2013) Genome sequence of the Lebeckia ambigua-nodulating “Burkholderia sprentiae” strain WSM5005. Standards in Genomic Sciences 9(2), 385-394. 10.4056/Sigs.4558268
Reeve, W. et al. (2013) Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471. Stand Genomic Sci 9(2), 254-63. 10.4056/sigs.4498256
Reeve, W. et al. (2013) Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943. Stand Genomic Sci 9(2), 232-42. 10.4056/sigs.4478252
Reeve, W. et al. (2013) Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565. Stand Genomic Sci 9(2), 220-31. 10.4056/sigs.4468250
Reeve, W. et al. (2013) Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012. Stand Genomic Sci 9(2), 283-93. 10.4056/sigs.4528262
Reeve, W. et al. (2013) Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). Stand Genomic Sci 9(2), 294-303. 10.4056/sigs.4538264
Reeve, W. et al. (2013) Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)). Stand Genomic Sci 9(2), 410-9. 10.4056/sigs.4568282
Reeve, W. et al. (2013) Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597. Stand Genomic Sci 9(2), 264-72. 10.4056/sigs.4508258
Reeve, W. et al. (2013) Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417. Stand Genomic Sci 9(2), 273-82. 10.4056/sigs.4518260
Reeve, W. et al. (2013) Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1. Stand Genomic Sci 9(2), 243-253. 10.4056/sigs.4488254
Rice, D. W. et al. (2013) Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science 342(6165), 1468-73. 10.1126/science.1246275
Riedel, T. et al. (2013) Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements. Stand Genomic Sci 8(3), 389-402. 10.4056/sigs.3858183
Riedel, T. et al. (2013) Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand. Stand Genomic Sci 9(1), 117-127. 10.4056/sigs.4258318
Rinke, C. et al. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature 499(7459), 431-7. 10.1038/nature12352
Rivers, A. R. et al. (2013) Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill. ISME J . 10.1038/ismej.2013.129
Romano, C. et al. (2013) Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park. Appl Environ Microbiol 79(9), 2932-43. 10.1128/AEM.03591-12
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