2011 Pubs - DOE Joint Genome Institute

Abt, B. et al. (2011) Complete genome sequence of Cellulophaga algicola type strain (IC166). Stand Genomic Sci 4(1), 72-80. 10.4056/sigs.1543845
Abt, B. et al. (2011) Complete genome sequence of Leadbetterella byssophila type strain (4M15). Stand Genomic Sci 4(1), 2-12. 10.4056/sigs.1413518
Adams, A. S. et al. (2011) Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio. ISME J 5(8), 1323-31. 10.1038/ismej.2011.14
Alverson, A. J. et al. (2011) Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber. Plant Cell 23(7), 2499-513. 10.1105/tpc.111.087189
Andersen, M. R. et al. (2011) Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Res 21(6), 885-97. 10.1101/gr.112169.110
Anderson, I. et al. (2011) Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Stand Genomic Sci 4(3), 381-92. 10.4056/sigs.2014648
Anderson, I. et al. (2011) Complete genome sequence of Ferroglobus placidus AEDII12DO. Stand Genomic Sci 5(1), 50-60. 10.4056/sigs.2225018
Anderson, I. et al. (2011) Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes. Plos One 6(5). ARTN e20237 DOI 10.1371/journal.pone.0020237
Anderson, I. et al. (2011) Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Stand Genomic Sci 4(3), 322-30. 10.4056/sigs.1844518
Anderson, I. et al. (2011) Complete genome sequence of Ferroglobus placidus AEDII12DO. Stand Genomic Sci 5(1), 50-60. 10.4056/sigs.2225018
Banks, J. A. et al. (2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332(6032), 960-3. 10.1126/science.1203810
Berka, R. M. et al. (2011) Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nat Biotechnol 29(10), 922-7. 10.1038/nbt.1976
Bini, E. et al. (2011) Complete genome sequence of Desulfurispirillum indicum strain S5(T). Stand Genomic Sci 5(3), 371-8. 10.4056/sigs.2425302
Blumer-Schuette, S. E. et al. (2011) Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus. Journal of Bacteriology 193(6), 1483-1484. Doi 10.1128/Jb.01515-10
Boden, R. et al. (2011) Complete Genome Sequence of the Aerobic Marine Methanotroph Methylomonas methanica MC09. Journal of Bacteriology 193(24), 7001-7002. Doi 10.1128/Jb.06267-11
Bresson, A. et al. (2011) Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar. New Phytologist 192(1), 151-163. DOI 10.1111/j.1469-8137.2011.03786.x
Brown, S. D. et al. (2011) Complete Genome Sequence of the Haloalkaliphilic, Hydrogen-Producing Bacterium Halanaerobium hydrogeniformans. Journal of Bacteriology 193(14), 3682-3683. Doi 10.1128/Jb.05209-11
Brown, S. D. et al. (2011) Genome Sequence of the Mercury-Methylating Strain Desulfovibrio desulfuricans ND132. Journal of Bacteriology 193(8), 2078-2079. Doi 10.1128/Jb.00170-11
Brown, S. D. et al. (2011) Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132. J Bacteriol 193(8), 2078-9. 10.1128/JB.00170-11
Brumm, P. et al. (2011) Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes (vol 163, pg 649, 2011). Applied Biochemistry and Biotechnology 163(5), 692-692. DOI 10.1007/s12010-010-9125-7
Brumm, P. et al. (2011) Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes. Applied Biochemistry and Biotechnology 163(5), 649-657. DOI 10.1007/s12010-010-9070-5
Burnum, K. E. et al. (2011) Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome. Isme Journal 5(1), 161-164. DOI 10.1038/ismej.2010.97
Cai, B. et al. (2011) MicroSyn: a user friendly tool for detection of microsynteny in a gene family. BMC Bioinformatics 12, 79. 10.1186/1471-2105-12-79
Campbell, M. A. et al. (2011) Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world’s oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’. Fems Microbiology Ecology 76(1), 39-48. DOI 10.1111/j.1574-6941.2010.01027.x
Casler, M. D. et al. (2011) The Switchgrass Genome: Tools and Strategies. Plant Genome 4(3), 273-282. DOI 10.3835/plantgenome2011.10.0026
Chabera, P. et al. (2011) Excited-state properties of the 16kDa red carotenoid protein from Arthrospira maxima. Biochim Biophys Acta 1807(1), 30-5. 10.1016/j.bbabio.2010.08.013
Chain, P. S. et al. (2011) Genomics for key players in the N cycle from guinea pigs to the next frontier. Methods Enzymol 496, 289-318. 10.1016/B978-0-12-386489-5.00012-9
Chain, P. S. G. et al. (2011) Genome of Ochrobactrum anthropi ATCC 49188(T), a Versatile Opportunistic Pathogen and Symbiont of Several Eukaryotic Hosts. Journal of Bacteriology 193(16), 4274-4275. Doi 10.1128/Jb.05335-11
Challacombe, J. F. et al. (2011) Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076. PLoS One 6(9), e24882. 10.1371/journal.pone.0024882
Chang, Y. J. et al. (2011) Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Stand Genomic Sci 5(1), 97-111. 10.4056/sigs.2114901
Chapman, J. A. et al. (2011) Meraculous: de novo genome assembly with short paired-end reads. PLoS One 6(8), e23501. 10.1371/journal.pone.0023501
Chertkov, O. et al. (2011) Complete genome sequence of Thermomonospora curvata type strain (B9). Stand Genomic Sci 4(1), 13-22. 10.4056/sigs.1453580
Chertkov, O. et al. (2011) Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)). Stand Genomic Sci 5(3), 287-97. 10.4056/sigs.2205004
Chiang, Y. M. et al. (2011) Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-gamma-pyrone. Fungal Genetics and Biology 48(4), 430-437. DOI 10.1016/j.fgb.2010.12.001
Chiang, Y. M. et al. (2011) Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-gamma-pyrone. Fungal Genetics and Biology 48(4), 430-437. DOI 10.1016/j.fgb.2010.12.001
Colbourne, J. K. et al. (2011) The Ecoresponsive Genome of Daphnia pulex. Science 331(6017), 555-561. DOI 10.1126/science.1197761
Coleman, N. V. et al. (2011) Genome Sequence of the Ethene- and Vinyl Chloride-Oxidizing Actinomycete Nocardioides sp Strain JS614. Journal of Bacteriology 193(13), 3399-3400. Doi 10.1128/Jb.05109-11
Copeland, A. et al. (2011) Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)). Stand Genomic Sci 5(3), 379-88. 10.4056/sigs.2285059
Daligault, H. et al. (2011) Complete genome sequence of Haliscomenobacter hydrossis type strain (O-T). Standards in Genomic Sciences 4(3), 352-360. Doi 10.4056/Sigs.1964579
DeAngelis, K. M. et al. (2011) Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil. Plos One 6(4). ARTN e19306 DOI 10.1371/journal.pone.0019306
Dover, N. et al. (2011) Novel Structural Elements within the Nonproteolytic Clostridium botulinum Type F Toxin Gene Cluster. Applied and Environmental Microbiology 77(5), 1904-1906. Doi 10.1128/Aem.02422-10
Druzhinina, I. S. et al. (2011) Trichoderma: the genomics of opportunistic success. Nat Rev Microbiol 9(10), 749-59. 10.1038/nrmicro2637
Duhaime, M. B. et al. (2011) Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard. Stand Genomic Sci 4(2), 271-85. 10.4056/sigs.621069
Duplessis, S. et al. (2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A 108(22), 9166-71. 10.1073/pnas.1019315108
Earl, D. et al. (2011) Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res 21(12), 2224-41. 10.1101/gr.126599.111
Earl, D. et al. (2011) Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res 21(12), 2224-41. 10.1101/gr.126599.111
Eastwood, D. C. et al. (2011) The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi. Science 333(6043), 762-5. 10.1126/science.1205411
Ellison, C. E. et al. (2011) Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma. Genetics 189(1), 55-69. 10.1534/genetics.111.130690
Feinberg, L. et al. (2011) Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313. J Bacteriol 193(11), 2906-7. 10.1128/JB.00322-11
Field, D. et al. (2011) The Genomic Standards Consortium. PLoS Biol 9(6), e1001088. 10.1371/journal.pbio.1001088
Field, D. et al. (2011) A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium. Stand Genomic Sci 5(2), 194. 10.4056/sigs.2295087
Foston, M. et al. (2011) Chemical, ultrastructural and supramolecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance. Energy & Environmental Science 4(12), 4962-4971. Doi 10.1039/C1ee02073k
Frese, S. A. et al. (2011) The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri. Plos Genetics 7(2). ARTN e1001314 DOI 10.1371/journal.pgen.1001314
Galardini, M. et al. (2011) Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti. Bmc Genomics 12. Artn 235 Doi 10.1186/1471-2164-12-235
Gerasimova, A. et al. (2011) Comparative Genomics of the Dormancy Regulons in Mycobacteria. Journal of Bacteriology 193(14), 3446-3452. Doi 10.1128/Jb.00179-11
Gibbons, H. S. et al. (2011) Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant. PLoS One 6(3), e17836. 10.1371/journal.pone.0017836
Gladden, J. M. et al. (2011) Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass. Applied and Environmental Microbiology 77(16), 5804-5812. Doi 10.1128/Aem.00032-11
Gobler, C. J. et al. (2011) Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United States of America 108(11), 4352-4357. DOI 10.1073/pnas.1016106108
Goker, M. et al. (2011) Complete genome sequence of Isosphaera pallida type strain (IS1B(T)). Standards in Genomic Sciences 4(1), 63-71. Doi 10.4056/Sigs.1533840
Goker, M. et al. (2011) Complete genome sequence of Odoribacter splanchnicus type strain (1651/6(T)). Standards in Genomic Sciences 4(2), 200-209. Doi 10.4056/Sigs.1714269
Goker, M. et al. (2011) Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2(T)). Standards in Genomic Sciences 4(3), 393-401. Doi 10.4056/Sigs.2064705
Goker, M. et al. (2011) Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Stand Genomic Sci 5(3), 407-15. 10.4056/sigs.2465574
Goodwin, S. B. et al. (2011) Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis. Plos Genetics 7(6). ARTN e1002070 DOI 10.1371/journal.pgen.1002070
Gori, F. et al. (2011) The metagenomic basis of anammox metabolism in Candidatus ‘Brocadia fulgida’. Biochem Soc Trans 39(6), 1799-804. 10.1042/BST20110707
Gori, F. et al. (2011) The metagenomic basis of anammox metabolism in Candidatus ‘Brocadia fulgida’. Biochemical Society Transactions 39, 1799-1804. Doi 10.1042/Bst20110707
Grbic, M. et al. (2011) The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature 479(7374), 487-92. 10.1038/nature10640
Grbic, M. et al. (2011) The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature 479(7374), 487-92. 10.1038/nature10640
Grigoriev, I.V. et al. (2011) Fueling the future with fungal genomics. Mycology 2(3), 192-209. 10.1080/21501203.2011.584577
Gronow, S. et al. (2011) Complete genome sequence of Bacteroides salanitronis type strain (BL78). Stand Genomic Sci 4(2), 191-9. 10.4056/sigs.1704212
Gronow, S. et al. (2011) Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Stand Genomic Sci 4(1), 36-44. 10.4056/sigs.1503846
Grote, J. et al. (2011) Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Stand Genomic Sci 5(3), 269-78. 10.4056/sigs.1854551
Grubbs, K. J. et al. (2011) Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete. J Bacteriol 193(11), 2890-1. 10.1128/JB.00330-11
Han, C. et al. (2011) Complete genome sequence of Treponema succinifaciens type strain (6091). Stand Genomic Sci 4(3), 361-70. 10.4056/sigs.1984594
Han, C. et al. (2011) Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Stand Genomic Sci 4(3), 371-80. 10.4056/sigs.2004684
Han, J. I. et al. (2011) Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110. J Bacteriol 193(5), 1183-90. 10.1128/JB.00925-10
Handoko, L. et al. (2011) CTCF-mediated functional chromatin interactome in pluripotent cells. Nat Genet 43(7), 630-8. 10.1038/ng.857
Hauser, L. J. et al. (2011) Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20. J Bacteriol 193(16), 4268-9. 10.1128/JB.05400-11
Hauser, L. J. et al. (2011) Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20. J Bacteriol 193(16), 4268-9. 10.1128/JB.05400-11
Hellsten, U. et al. (2011) A segmental genomic duplication generates a functional intron. Nat Commun 2, 454. 10.1038/ncomms1461
Hess, M. et al. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331(6016), 463-7. 10.1126/science.1200387
Hsu, C. Y. et al. (2011) FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proc Natl Acad Sci U S A 108(26), 10756-61. 10.1073/pnas.1104713108
Hu, T. T. et al. (2011) The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet 43(5), 476-81. 10.1038/ng.807
Huang, Y. J. et al. (2011) Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol 127(2), 372-381 e1-3. 10.1016/j.jaci.2010.10.048
Huntemann, M. et al. (2011) Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Stand Genomic Sci 4(3), 303-11. 10.4056/sigs.1814460
Ivanova, N. et al. (2011) Complete genome sequence of Truepera radiovictrix type strain (RQ-24). Stand Genomic Sci 4(1), 91-9. 10.4056/sigs.1563919
Ivanova, N. et al. (2011) Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Stand Genomic Sci 4(3), 312-21. 10.4056/sigs.1824509
Jackson, S. A. et al. (2011) Sequencing crop genomes: approaches and applications. New Phytol 191(4), 915-25. 10.1111/j.1469-8137.2011.03804.x
Jiang, Z. et al. (2011) Development and initial characterization of a HAPPY panel for mapping the X. tropicalis genome. Int J Biol Sci 7(7), 1037-44.
Kalamorz, F. et al. (2011) Draft genome sequence of the thermoalkaliphilic Caldalkalibacillus thermarum strain TA2.A1. J Bacteriol 193(16), 4290-1. 10.1128/JB.05035-11
Kallimanis, A. et al. (2011) Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1. Stand Genomic Sci 5(1), 144-53. 10.4056/sigs.2265047
Kallimanis, A. et al. (2011) Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3). Stand Genomic Sci 4(2), 123-30. 10.4056/sigs.1393494
Kallimanis, A. et al. (2011) Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1. Stand Genomic Sci 5(1), 144-53. 10.4056/sigs.2265047
Kant, R. et al. (2011) Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium. J Bacteriol 193(11), 2902-3. 10.1128/JB.00295-11
Kant, R. et al. (2011) Genome sequence of “Pedosphaera parvula” Ellin514, an aerobic Verrucomicrobial isolate from pasture soil. J Bacteriol 193(11), 2900-1. 10.1128/JB.00299-11
Karpowicz, S. J. et al. (2011) The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage. J Biol Chem 286(24), 21427-39. 10.1074/jbc.M111.233734
Kerfeld, C. A. et al. (2011) Using BLAST to Teach “E-value-tionary” Concepts. Plos Biology 9(2). ARTN e1001014 DOI 10.1371/journal.pbio.1001014
Kim, T. W. et al. (2011) High-throughput in vitro glycoside hydrolase (HIGH) screening for enzyme discovery. Angew Chem Int Ed Engl 50(47), 11215-8. 10.1002/anie.201104685
Kinney, J. N. et al. (2011) Comparative analysis of carboxysome shell proteins. Photosynth Res 109(1-3), 21-32. 10.1007/s11120-011-9624-6
Kiss, H. et al. (2011) Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)). Stand Genomic Sci 5(3), 356-70. 10.4056/sigs.2194987
Klassen, J. L. et al. (2011) Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb. J Bacteriol 193(24), 6999-7000. 10.1128/JB.06257-11
Klassen, J. L. et al. (2011) Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb. J Bacteriol 193(24), 6999-7000. 10.1128/JB.06257-11
Klenk, H. P. et al. (2011) Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov as Kyrpidia tusciae comb. nov and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences 5(1), 121-134. Doi 10.4056/Sigs.2144922
Klippel, B. et al. (2011) Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae. J Bacteriol 193(17), 4545-6. 10.1128/JB.05518-11
Klippel, B. et al. (2011) Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5. J Bacteriol 193(17), 4547-8. 10.1128/JB.05468-11
Kochetov, A. V. et al. (2011) Tandem termination signal in plant mRNAs. Gene 481(1), 1-6. 10.1016/j.gene.2011.04.002
Kouvelis, V. N. et al. (2011) Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192. J Bacteriol 193(18), 5049-50. 10.1128/JB.05273-11
Kubicek, C. P. et al. (2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology 12(4). Artn R40 Doi 10.1186/Gb-2011-12-4-R40
Lang, E. et al. (2011) Complete genome sequence of Weeksella virosa type strain (9751). Stand Genomic Sci 4(1), 81-90. 10.4056/sigs.1603927
Lapidus, A. et al. (2011) Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). Stand Genomic Sci 5(1), 86-96. 10.4056/sigs.2235024
Lapidus, A. et al. (2011) Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae. J Bacteriol 193(15), 3757-64. 10.1128/JB.00404-11
Lapidus, A. et al. (2011) Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)). Stand Genomic Sci 5(3), 398-406. 10.4056/sigs.2344929
Liolios, K. et al. (2011) Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). Stand Genomic Sci 5(1), 30-40. 10.4056/sigs.2154937
Liu, S. et al. (2011) Complete genome sequence of Lactobacillus buchneri NRRL B-30929, a novel strain from a commercial ethanol plant. J Bacteriol 193(15), 4019-20. 10.1128/JB.05180-11
Lukashin, I. et al. (2011) VISTA Region Viewer (RViewer)–a computational system for prioritizing genomic intervals for biomedical studies. Bioinformatics 27(18), 2595-7. 10.1093/bioinformatics/btr440
Lykidis, A. et al. (2011) Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. Isme Journal 5(1), 122-130. DOI 10.1038/ismej.2010.125
Lykidis, A. et al. (2011) Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME J 5(1), 122-30. 10.1038/ismej.2010.125
Mackelprang, R. et al. (2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480(7377), 368-71. 10.1038/nature10576
Mackelprang, R. et al. (2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480(7377), 368-71. 10.1038/nature10576
Martin, F. et al. (2011) Sequencing the fungal tree of life. New Phytol 190(4), 818-21. 10.1111/j.1469-8137.2011.03688.x
Martin, J. A. et al. (2011) Next-generation transcriptome assembly. Nat Rev Genet 12(10), 671-82. 10.1038/nrg3068
Mavromatis, K. et al. (2011) Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Stand Genomic Sci 4(2), 144-53. 10.4056/sigs.1553862
McCluskey, K. et al. (2011) Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa. G3 (Bethesda) 1(4), 303-16. 10.1534/g3.111.000307
Medina, M. et al. (2011) Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics. Marine Genomics 4(1), 51-59. DOI 10.1016/j.margen.2010.12.006
Miller, D. A. et al. (2011) Complete Genome Sequence of the Cellulose-Degrading Bacterium Cellulosilyticum lentocellum. Journal of Bacteriology 193(9), 2357-2358. Doi 10.1128/Jb.00239-11
Morrison, N. et al. (2011) Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets. Standards in Genomic Sciences 4(2), 286-292. Doi 10.4056/Sigs.1344279
Munk, A. C. et al. (2011) Complete genome sequence of Rhodospirillum rubrum type strain (S1(T)). Standards in Genomic Sciences 4(3), 293-302. Doi 10.4056/Sigs.1804360
Munk, A. C. et al. (2011) Complete genome sequence of Tsukamurella paurometabola type strain (no. 33(T)). Standards in Genomic Sciences 4(3), 342-351. Doi 10.4056/Sigs.1894556
Muyzer, G. et al. (2011) Complete genome sequence of “Thioalkalivibrio sulfidophilus” HL-EbGr7. Stand Genomic Sci 4(1), 23-35. 10.4056/sigs.1483693
Muyzer, G. et al. (2011) Complete genome sequence of “Thioalkalivibrio sulfidophilus” HL-EbGr7. Stand Genomic Sci 4(1), 23-35. 10.4056/sigs.1483693
Muyzer, G. et al. (2011) Complete genome sequence of Thioalkalivibrio sp. K90mix. Stand Genomic Sci 5(3), 341-55. 10.4056/sigs.2315092
Nawabi, P. et al. (2011) Engineering Escherichia coli for biodiesel production utilizing a bacterial fatty acid methyltransferase. Appl Environ Microbiol 77(22), 8052-61. 10.1128/AEM.05046-11
Oosterkamp, M. J. et al. (2011) Genome sequences of Alicycliphilus denitrificans strains BC and K601T. J Bacteriol 193(18), 5028-9. 10.1128/JB.00365-11
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