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“DOE JGI releases expanded version of Phytozome.net”

Phytozome provides a central “hub” for web access to a rapidly growing number of plant genomes, and includes tools for visualization of plant genomes and associated annotations, sequence analysis, and bulk, as well as targeted, plant data retrieval. The gene families available in Phytozome, defined at several evolutionarily significant epochs, provide a framework for the… [Read More]

“Integrated microbial genomes expert review goes primetime”

Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Biological Data Management and Technology Center (BDMTC) at Lawrence Berkeley National Laboratory have launched the Expert Review (ER) version of the Integrated Microbial Genomes (IMG) system. IMG ER supports and enhances the review and revision of annotations for both publicly available… [Read More]

“Hands-on research inspires freshman biology students”

At the beginning of her first quarter at UC Santa Cruz, freshman biology student Kimberly Davis collected some soil from the forest floor near Thimann Labs. She then isolated a bacterial virus from the soil, took pictures of it with an electron microscope, extracted the virus’s DNA, sent it off for sequencing by the national… [Read More]

“HHMI Seeks Schools to Join Science Education Revolution”

The purified DNA from one virus was sent by each school to the Joint Genome Institute-Los Alamos National Laboratory in New Mexico for sequencing. That resulting data allowed students to spend the second term using bioinformatics tools to analyze and annotate the DNA sequence and identify genes. Students compared their DNA sequence to that characterized… [Read More]

“DOE JGI releases expanded version of Phytozome.net”

An enhanced version of Phytozome.net, a web portal for comparative plant genomics geared to advance biofuel, food, feed, and fiber research, has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). The rest of the story appears here. [Read More]

‘Algae leading the way to photosynthesis’

Scientists have decoded genomes of two strains of green algae, highlighting genes that allow them to capture carbon emissions and maintain the oceans’ chemical balance, a study said on Thursday. The strains’ productivity as a significant source of marine food and their ability to capture carbon means the algae can influence the carbon flux and… [Read More]

Genes from tiny marine algae opens new avenues of research

By sequencing the DNA of two tiny marine algae, a team of scientists has opened up a myriad of possibilities for new research in algal physiology, plant biology, and marine ecology. The project was led by Alexandra Worden at the Monterey Bay Aquarium Research Institute (MBARI) and the Joint Genome Institute (JGI). The genome analyses… [Read More]

UI biologist studies ocean plant cell adaptation in climate change

How will plant cells that live in the oceans and serve as the basic food supply for many of the world’s sea creatures react to climate change? A University of Iowa biologist and faculty member in the Roy J. Carver Center for Comparative Genomics and his colleagues came one step closer to answering that question… [Read More]

Unraveling the Mysteries in Sorghum’s ‘Simple’ Genome

Mapping out a genetic blueprint involves determining several short sections that would make up a gene, and sequencing those in bulk. Then, scientists take all of those pieces and put them together like a puzzle—a difficult puzzle, according to Dan Rokhsar, the computational biology leader at the U.S. DOE Joint Genome Institute in Walnut Creek,… [Read More]