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… platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United … Biology Knowledgebase. Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic … Academy of Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and Emonet, T. …

… Selected Publications …

… over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm … deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes … of polar phytoplankton.  Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal …

… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et al.  SIMILE … Selected Publications …

… Award 2012 Jane Coffin Childs Memorial Fund, Fellow 2007-2008 Editorial board member of Synthetic Biology (Oxford … Selected Publications …

… for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides scientific project management for … polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., … World’s Most Influential Scientific Minds 2014-2018 (Plant & Animal Science) Clarivate Analytics Highly Cited …

… 2005-2009: NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in … using mass spectrometry imaging. Analytical chemistry, 89(11), 5818–5823. Baran, R., Brodie, E., Mayberry-Lewis, J., Hummel, … Selected Publications …

… from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer … plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root … Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for …

… energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide analysis on Chlamydomonas … with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., High-resolution profiling of a … Selected Publications …

… 2018-2023 Highly Cited Researcher, Biology and Biochemistry, … Genomic Standards Consortium Advisory Board member (2018-current) France Genomique Scientific Advisory Board member … and host interactions through global metagenomics. Nature 578, 432-436. Bowers et al. 2017. Minimum information about a …

… Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics … the ASCR Future Computing Methodologies workshops. In 2018, Dr. Fagnan was part of the Gordon Bell prizewinning team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. …