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… library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). … Energy Systems Biology Knowledgebase. Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. … Selected Publications …

… (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … Selected Publications …

… by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil … evolution of polar phytoplankton.  Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a … Selected Publications …

… Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et al.  SIMILE enables alignment … Nat Commun. 13, 2510 (2022). https://doi.org/10.1038/s41467-022-30118-9 Swift CL, et al. Anaerobic gut fungi are an …

… Selected Publications …

… co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome … for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides scientific project management for … complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., …

… 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for … among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, T., Wang, T., Ruebel, O., Northen, … CUR matrix decompositions. Analytical chemistry, 87(9), 4658–4666. Wang, Y., Kora, G., Bowen, B., & Pan, C. (2014). …

… of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet … Morphology by Distant-Acting In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of weakly conserved heart enhancers. Nat Genet 429:806-10. …

… metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool … energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide analysis on Chlamydomonas … metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a …

… Editorial Board Member for ISME J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). … metabolically active, membrane-bound organelles. Science 376:1453 Schulz et al. 2022. Giant virus biology and diversity … interactions through global metagenomics. Nature 578, 432-436. Bowers et al. 2017. Minimum information about a single …

… workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and … and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., Anubhav, Auberry, D. et al. The … Two-Phase Flow In Porous Media. Computational Geophysics 16(3). Dosanjh and S. Canon and J. DeSlippe and K. Fagnan and …