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DAS Tool for Genome Reconstruction from Metagenomes
… have developed and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to … a team of researchers has been working on improving methods for isolating and characterizing entire microbial genomes … Berkeley and involving JGI researchers, reported on the development and validation of a dereplication, aggregation …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms … ​​bio-based industrial products.    The Science Scientists have fully decoded the genome of an oil-producing green … This work was supported by the Department of Energy (DOE) … support from the Gordon and Betty Moore Foundation (to SSM) for the work on  A. symbiontica (9203). RJC was supported …
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JGI User Executive Committee Expands
… Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron … National Laboratory, Rebecca Smith of the University of Wisconsin, Maggie Sogin of the University of California, … more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal evolutionary ecologist with …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) program. Cole also received a DOE  Early …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, … Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from … BS in Biochemistry and Biological Chemistry, Nottingham University, UK …
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DAP-seq Drives Robust Mapping of Gene Regulation
… and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … cell types, shedding light on the molecular basis of plant development and adaptation. “You learn a lot more than you …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong … Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … stepping stone in my bioinformatics learning and career development,” she noted. …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more …
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