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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … were directly assigned to the two of us just to get the structure set up and collect the first round of feedback …
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Extracting the Secrets of Secondary Metabolites
… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … secondary metabolites within a lab environment, shining a light into this “biological dark matter.”  It also offers …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal symbiotic lifestyles found in …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley … Computing Center, the Molecular Foundry and the Advanced Light Source, future collaborative research projects were …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.       Despite advances in sequencing technologies and computational methods in the …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … resist. The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … Program was brimming with excitement and determination as they came onsite. From data carpentry to science … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth … both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … here in modified format; their conversation has been lightly edited and condensed below. Sarah Sharman:  What is …
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