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… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … sample processing and sequencing capabilities. The Genomic Technologies Group, which includes the Sequencing … through end-to-end automation — and further advancing sequence applications, single cell genomics, DNA synthesis, …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and biogeochemistry. This research helps translate their genomic potential into practical applications, including …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … The program provides high-quality, large-scale genomic data to advance microbial research that drives …

… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics …

… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …

… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs …