Publications
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Metagenome
Microbial
Paez-Espino, D. et al. (2016) IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Research. 10.1093/nar/gkw1030
Genomic Technologies
Lam et al. (2016) BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly. BMC Bioinformatics. 10.1186/s12859-016-1288-y
Metagenome
Microbial
Mukherjee, S. et al. (2016) Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. Nucleic Acids Research. 10.1093/nar/gkw992
Metabolomics
Shih, P. M. et al. (2016) A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature Communications. 10.1038/ncomms13215
Genomic Technologies
Microbial
Ganji, R. et al. (2016) High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada. Microbiology Resource Announcements. 10.1128/genomea.01112-16
Data Science & Informatics
Metagenome
Director's Science, R&D, and Work For Others
Kamke, J. et al. (2016) Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation. Microbiome. 10.1186/s40168-016-0201-2
Fungal & Algal
Genomic Technologies
Community Science Program
Chin et al. (2016) Phased diploid genome assembly with single-molecule real-time sequencing. Nature Methods. 10.1038/nmeth.4035
Plant
Woods et al. (2016) Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon . Plant Physiology. 10.1104/pp.16.01178
Metagenome
Microbial
Chen, I. A. et al. (2016) IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Research. 10.1093/nar/gkw929
Metagenome
Microbial
Tsesmetzis et al. (2016) MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources. Environmental Microbiome. 10.1186/s40793-016-0203-5
Plant
Suzuki, A. et al. (2016) Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis. Developmental Biology. 10.1016/j.ydbio.2016.04.014
Microbial
Mukai, T. et al. (2016) Transfer RNAs with novel cloverleaf structures. Nucleic Acids Research. 10.1093/nar/gkw898