Publications

Oberortner, E. et al. (2016) Streamlining the Design-to-Build Transition with Build-Optimization Software Tools. ACS Synthetic Biology. 10.1021/acssynbio.6b00200

Hahnke, R. L. et al. (2016) Genome-Based Taxonomic Classification of Bacteroidetes. Frontiers in Microbiology. 10.3389/fmicb.2016.02003

Yi, W. et al. (2016) Triphenyltin degradation and proteomic response by an engineered Escherichia coli expressing cytochrome P450 enzyme. Ecotoxicology and Environmental Safety. 10.1016/j.ecoenv.2016.11.012

Lastovetsky, O. A. et al. (2016) Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria. Proceedings of the National Academy of Sciences of the United States of America. 10.1073/pnas.1615148113

Thi et al. (2016) Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei. PLOS ONE. 10.1371/journal.pone.0167171

Robicheau, B. M. et al. (2016) The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex. Fungal Biology. 10.1016/j.funbio.2016.11.007

Lux, M. et al. (2016) acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics. 10.1186/s12859-016-1397-7

Seppälä, S. et al. (2016) Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters. Microbial Cell Factories. 10.1186/s12934-016-0611-7

Mansueto, L. et al. (2016) Rice SNP-seek database update: new SNPs, indels, and queries. Nucleic Acids Research. 10.1093/nar/gkw1135

Hadjithomas, M. et al. (2016) IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Research. 10.1093/nar/gkw1103

Woo, H. et al. (2016) Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm. Microbiology Resource Announcements. 10.1128/genomea.01297-16

Wang, L. et al. (2016) Interactions among triphenyltin degradation, phospholipid synthesis and membrane characteristics of Bacillus thuringiensis in the presence of d-malic acid. Chemosphere. 10.1016/j.chemosphere.2016.10.140