Publications

Nagy, L. G. et al. (2016) Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution. Molecular Biology and Evolution. 10.1093/molbev/msw238

Butterfield, C. N. et al. (2016) Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PeerJ. 10.7717/peerj.2687

Frazier et al. (2016) Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass. BMC Genomics. 10.1186/s12864-016-3201-5

Brown, C. T. et al. (2016) Measurement of bacterial replication rates in microbial communities. Nature Biotechnology. 10.1038/nbt.3704

Hwang, C. et al. (2016) Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. Microbiology Resource Announcements. 10.1128/genomea.01226-16

Moghaddam et al. (2016) Genome‐Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean. The Plant Genome. 10.3835/plantgenome2016.02.0012

Paez-Espino, D. et al. (2016) IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Research. 10.1093/nar/gkw1030

Lam et al. (2016) BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly. BMC Bioinformatics. 10.1186/s12859-016-1288-y

Mukherjee, S. et al. (2016) Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. Nucleic Acids Research. 10.1093/nar/gkw992

Shih, P. M. et al. (2016) A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature Communications. 10.1038/ncomms13215

Ganji, R. et al. (2016) High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada. Microbiology Resource Announcements. 10.1128/genomea.01112-16

Kamke, J. et al. (2016) Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation. Microbiome. 10.1186/s40168-016-0201-2