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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI together aim to publish the first analysis of data produced at the facility, provided …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … of  Dysgonomonas hofstadii  DSM 104969 Isolated from a human abdominal surgery wound. V. Torres, et. al.  2025. … Matt Escobar,  CSU San Marcos          "This was our first paper . It was definitely interesting going through …
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Publications
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Natural Prodcast Episode 10: A Primer on Genome Mining
… back for our second season of Natural Prodcast. This first episode up is another primer episode. These are … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … what looked to be novel biosynthetic gene clusters, like completely new things that we haven’t seen before. And so …
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FICUS
… proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … available from all the facilities participating in the FY25 call, introduces the resources available from the …
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Natural Prodcast Episode 20: Brian Bachmann
… two things I wanted to tell you about in this introduction. First and foremost, our interview this week is with … called Ecopia was talking about a gene cluster a week. They completed a gene cluster per week. And that really got me … where you have to go miles underneath the surface where no human has ever tread And that there’s very, very, very low …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … assembly and binning have enabled reconstruction of complete or near-complete population genomes directly from the environment. …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a little … some, you know, major historical events and craziness in human history.  ALISON: Yeah, that natural products could be …
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Natural Prodcast Episode 7: Ben Shen
Prodcast. It’s been about a month now since we dropped our first six episodes, and now after gathering some feedback … they were known as the most toxic molecules, and that human beings know, today, for small molecules. So they’re in … natural product producing organism, the Actinomyces, was completed in early 2000s. One of the major discovery from …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … if you ended up here somehow without having listened to the first part, you might be a little lost, and I’d suggest you … is throughout nature, except maybe for animals and humans, not as much. You know, we have this human centric …
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Products
… sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …
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DNA Synthesis Program
… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … for bioenergy and bioproduct applications. The program has completed over 70 projects, including gene synthesis, … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and …
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