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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … of multiple Department of Energy Office of Science National User Facilities into their research. In recognition of the increasingly collaborative and multidisciplinary …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … perspective, involving more multidisciplinary teams. The work also paved the way for a longstanding collaboration …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … Oak Ridge Leadership Computing Facility and Exabiome — worked to offer researchers high-powered tools for … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing … decoded the genome of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the … function as a self-sufficient biotechnology. Overall, this work supports the mission of the Department of Energy (DOE) …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … problem: at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign — … instructions via email.   Human or animal disease-related work will NOT be considered under this program. Plant …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of … assembly of two Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and … by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to establish …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence binning … Opportunity Program in 2013, a team of researchers has been working on improving methods for isolating and …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference … of eucalypts as woody biomass crops for the bioeconomy. The work contributes to the efforts of the  U.S. Department of … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek to establish with our stakeholders. The …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … a platform widely used across the research community — the work lowers technical barriers for researchers who … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … focused on tool development. Specifically, the goal of this work is to develop tools, curated databases, and streamlined …
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