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JGI Scientists Pen Genome Watch Articles
… Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) … latest article, published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written …
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Genome Insider
… — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Integrating Experimentation with Data
…                   General attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint … in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational … in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s … on understanding the origin, evolution, and diversity of plants and animals by combining computational genome …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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A Sorghum Pangenome Opens More Doors to Discovery
… addition to bolstering sorghum fields, understanding this plant eventually offers avenues for translating its … shows only one slice of the adaptation possible for this plant. In other lines around the world, much more genetic … to build this pangenome, including a reassembly of the BTx623 reference genome. This cultivar has been the reference …
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DAS Tool for Genome Reconstruction from Metagenomes
… functions in processes ranging from nutrient cycling to plant health and growth. Developing a scalable computational … of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … by the Banfield lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, Calif., and …
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The Case for Conservation
… The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are … genome references are now available for male and female plants of fire moss. Most notably, the work revealed that …
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Making a Lichen Together
… Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … This work was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of … DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a …
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2024 Progress Report
… in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … A record number of primary users — 2,456 — had active proposals with us, along with more than … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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10 From JGI on the 2019 Highly Cited Researchers List
… the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 … Category Fungal and Algal Program head Igor Grigoriev , Plant & Animal Science category Plant Program Library Construction Group Lead Jane Grimwood …
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