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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… experience at the JGI, the Genomics Internship Program expanded to include UC Merced undergraduate students through … the difficult early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … … Jensen, R. O. et al. 2024. Phylogenomics and genetic analysis of solvent-producing Clostridium species. Scientific Data. 11 Hahnke, R. L. et al. 2022. Expanding the Genomic Encyclopedia of Actinobacteria with 824 …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward … Columbia Sergio Munoz Gomez , Purdue University Anja Spang , Royal Netherlands Institute for Sea Research (NIOZ) …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to …
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Special Initiatives & Programs
… and requesting an optional letter of feasibility to accompany their proposal  should fill out this form . Please … your request to be processed. Investigators wishing to expand on their DOE-BER funded work with additional … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … they often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from …
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I-Min (Amy) Chen
… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … kind, deployed to tens of pharmaceutical and biotech companies. … Chen I-MA, Chu K, Palaniappan K, Ratner A, Huang … P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system v.7.0: content updates and new features. …
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JGI@25: From Life at the Extremes to Editing Genomes
… development by Mammoth Biosciences, one of several companies that Doudna has founded. Doudna’s interest in CRISPRs … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… of microbiology and is awarded on the recommendation of a panel of experts of the International Committee on Systematics of Prokaryotes. Due to the ongoing pandemic, Woyke will receive the prize at a future date. In …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… effort to improve the emerging bioenergy crop switchgrass ( Panicum virgatum ), which has established 10 experimental … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy …
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