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… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and … in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. … microsporus." Nature Communications 16, no. 1 (2025): 3843. McCahill, Ian W., Logayn T. Abushal, Bahman Khahani, …

… of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan V, … Education …

… platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United … Biology Knowledgebase. Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic … Academy of Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and Emonet, T. …

… RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and … viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. Ecology and molecular targets of … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome …

… over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm … deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes … of polar phytoplankton.  Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal …

… arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long … Education …

… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of … virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat …

… the faculty of University of California, Berkeley in 1989, as a member of the Physics Department and in 2002 he … 2018 Marthella Foskett Brown Chair, Computational Biology, UC … Education …

… heme-binding split-barrel family. J Biol Chem  300(11), 107888. Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, … Education …

… 2005-2009: NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in … using mass spectrometry imaging. Analytical chemistry, 89(11), 5818–5823. Baran, R., Brodie, E., Mayberry-Lewis, J., Hummel, … Education …

… from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer … plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root … Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for …

… of simple and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s … host interactions through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature …