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Promoting the Power of Viral Metagenomics
… have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like … at all.  In fact, even in non-pandemic times such viruses are well known to play major roles in a vast range of …
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Styling for Safety: PPE, It’s the JGI Way
… is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE or Personal … is worn to minimize exposure to hazards that can cause workplace injuries and illnesses. These injuries and … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Improving the Cacao Genome and Phytozome
… annotation was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional biology and breeding.     … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Simon Roux (Cross-field)  Jeremy Schmutz (Cross-field)  Susannah Tringe (Microbiology)  Tanja Woyke (Biology and Biochemistry)  Here’s a selection of studies these busy bees contributed to:  Giant bacteria visible to the … : Under the umbrella of the GEBA, the JGI is sequencing thousands of bacterial and archaeal genomes from diverse …
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments …
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Jeremy Schmutz
… years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Igor Grigoriev
… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … geomics and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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Yasuo Yoshikuni
… Biology Pathway Engineering group. His research focus includes engineering of non-model yeasts for production … microbe-microbe and plant-microbe interactions in various environments to improve crop yield, and developing a … startup, Bio Architecture Lab, Inc. (BAL), where he used systems and synthetic biology to discover novel …
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DAS Tool for Genome Reconstruction from Metagenomes
… The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … and soil from the Angelo Coast Range Reserve in California. Using DAS Tool on data from soil samples, researchers were … genomes with >90% completeness. These results, noted JGI User Programs Deputy Susannah Tringe , suggest that …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the full … and data available through MycoCosm — a platform widely used across the research community — the work lowers …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial … chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold … , scientists found that adding salt to the growth medium caused Streptomyces coelicolor to activate multiple chemical …
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The fungus that made itself at home
… the dry rot ( Serpula lacrymans ) is so destructive in houses. A study involving six brown rot fungi reveals the … towards breaking down plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the fungus has responded to manmade changes in its ecological …
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