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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of … their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, … patience of my JGI PIs, having lots of data to play around with.” …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … located at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … April 2024 — through serving an increased number of users with a record output of products, making data easier to … 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications were published   … …
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PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … expedition to explore, collect and catalog samples, and look for patterns in algal communities, …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research … Free-Living Growth and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et …
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Ben Bowen
Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … individual genome highlighting the fact that the genetic information in a single reference genome is insufficient. …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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Microbiome Data Science Team
The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts … Methods  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with the people behind the science. Hear diverse voices in … to contribute to a more sustainable world. Learn about JGI-supported projects, delving into the researchers’ …
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