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Computationally Classifying Fungal Lifestyles
… known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … the 1000 Fungal Genomes Project, which aims to provide a reference genome for each of the fungal families. Researchers had access to …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest … portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal …
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Cody Webb
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Complete genome sequence of Methanospirillum hungatei type strain JF1
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… and applying laboratory ecosystems to help transition microbiome science from largely observational to … of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of … dynamic interactions, offering an unparalleled platform for exchanging ideas, forming collaborations, and …
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The Case for Conservation
… is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … for Biotechnology, reported that high quality genome references are now available for male and female plants of …
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I-Min (Amy) Chen
… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, … K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … thrives in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt levels … They are also the primary producers in the marine food web, forming the base of the food chain and providing energy …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … a Nobel Prize in Chemistry to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining …
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JGI@25: The Little Alga That Could
… known as “Chlamy” to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a … (23.8%) of publications focused on that specific algae. The reference genome is cited in roughly 10% of all …
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