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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial … its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a more global …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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JGI on the 2020 Highly Cited Researchers List
… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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A User-Centered Approach to Accessing JGI Data
… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In … production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane … how such inter-Facility collaborations through the Genomes to Structure and Function focus area of the JGI’s … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering … of activities at JGI - proposal submission and review, project and work order creation and management, automated … operation.   Pursuing an interest in coordinating teams and project management, he worked with the Informatics …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar regions. While microbial populations in other … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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