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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the … information. According to Lawrence, this summer project aligned with his computational background and …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw … enzyme variants. ECR enzymes are capable of fixing CO2 many times faster than RuBisCo, the most common CO-2 fixing …
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Triggering Morel Fruiting
Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every …
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … Olmstead worked with postdoctoral fellow Ben Cole on a project involving bacteria in Arabidopsis plant roots. At …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team … by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the …
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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He … Your ethics always point due north.” Joe Harkins served as project lead on the new building that would eventually rise …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … Metagenomic discovery of biomass-degrading genes and genomes from cow rumen . Science 331, 463-7. Visel A , Zhu …
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