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Plant-Microbial Interactions Group
… is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of … rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the … and computational approach, we employ various omics technologies, strain engineering and experimental …
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Frequently Asked Questions: Proposal Submission
… limits, and instructions.  Many of the submissions are done using web-based forms.   To view the proposal templates, … are open to both domestic and international applicants from any institution type and at any career stage. … specific product types covered in the call.    If you have technical questions, we encourage you to contact us in …
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Natural Prodcast Episode 19: Bill Fenical
… real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill … animals, for example by dredging and all these kinds of techniques. But the ocean was just not considered to be of … from the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we …
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FICUS
… and expertise of multiple DOE National User Facilities in one research proposal.  Successful applications will focus … but proof of concept for the demonstration of a technology that would be applicable to DOE mission is … FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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Natural Prodcast Episode 5: Brad Moore
… the University of Hawaii and moved there in the early ’60s from Berkeley to work on this new budding field of marine … NOAA has funded to really look at how we can use our gene technology to predict when blooms are going to happen, that … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Natural Prodcast Episode 12: Nadine Ziemert
Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, she’s a … a marine actinomycete bacterium. So they look kind of like fungi but also make these mycelia. They kind of look like … talking about what it would take to expand on the existing technology. And a lot of that was around chemical …
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Publication Policy
… of data produced at the facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … DOIs following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … in the earlier primers. In bacteria, at least, and in most fungi, biosynthetic gene clusters, which are the genes that … service to the secondary metabolite community. What other techniques are there for finding these biosynthetic gene …
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Natural Prodcast Episode 14: Nigel Mouncey
… lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … new role as the Society for Industrial Microbiology and Biotechnology’s (SIMB) new President-elect. I also want to take … which, at least at the time, was called Inatreq . It’s a fungicide that is active against Sartoria which is a really …
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Partnerships: Adopt-A-Genome
… working with the JGI 120 genomes claimed (or about one per student) Seven student-drafted articles accepted … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … skills necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for …
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals will be … by the due date printed below. Proposals will be invited from those applicants whose LOI is approved. The letter of …
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