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2022 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory …
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Partnerships: Adopt-A-Genome
JGI products and services while nurturing a fresh cohort of users Reach the next generation of genome scientists and … Importantly, IMG/M provides data and tools via a graphical user interface, so no programming knowledge and no dedicated … Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522 R Robertson, et. al.  …
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Ben Bowen
… chemoinformatics, and bioinformatics facilitates impactful scientific discoveries, supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental …
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Refining the Process of Identifying Algae Biotechnology Candidates
… through a screening and characterization pipeline. The Impact Part of the Department of Energy’s work toward … involving researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… them to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been … , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How Filamentous Fungi Sense Food
… including lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for filamentous … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… study? How many samples are typically involved? How long does it take to do all the analyses? A:  For the JGI  New … available on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of JGI eligible … analyses? A:  This can be requested through the  JGI/EMSL FICUS user program .  Q:  Is it possible to use these …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… a (microbial) community to clean up a Superfund site. The Impact The Comprehensive Environmental Response, … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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A Natural Mechanism Can Turbocharge Viral Evolution
… a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … research used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of …
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Computationally Classifying Fungal Lifestyles
Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes fungi that obtain … A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fishing for Novel Cellulose Degraders
… led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … bacterium typically found in low abundances. The Impact Microbes are known to be key contributors to the …
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