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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … The work (proposal: 10.46936/10.25585/60008105, WIP proposal ID: 508017, … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE … work conducted at the University of Pretoria was supported by the University of Connecticut (UConn) …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The … the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  … of Energy [DE-AC02-05CH11231]. Dr. Charles Gawad has been supported for this work by a Chan Zuckerberg Biohub …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & … energy and environmental challenges.  The invited talks emphasize how the research infrastructure – DNA sequencing, …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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JGI Announces 2026 Functional Genomics Recipients
… Pictured from left: [Above] Hanin Alzubaidy, Markus Covert, Sheel C. Dodani, Kathryn Fixen, Jane Fudyma, Daniel S. Gregoire; [Middle] Andreas Guerrero, Michelle Hulin, Aditya Kunjapur, Seung Hwan …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing … alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have … This work was supported by the Department of Energy (DOE) Office of …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, … of Energy under Contract No. DE-AC02-05CH11231. Support was provided by the DOE and the National Institutes of …
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