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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … the goal of this work is to develop tools, curated databases, and streamlined workflows that allow researchers …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to … The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … supported by a JGI Director’s Science award. The DOE Joint BioEnergy Institute (http://www.jbei.org) is supported by …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising … data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint … Immediately following the NeLLi Symposium, join us for a 1.5-day jamboree on November 6-7 focused on improving … will provide new cornerstones for research in the areas of bioenergy and biomedicine, as well as biotechnology. … …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … Wang, Y., Kora, G., Bowen, B., & Pan, C. (2014). MIDAS: a database-searching algorithm for metabolite identification …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this …
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … 2021. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature 590: 438-444. Mamidi, S et al. …
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