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Publication Policy
… The purpose of this policy is to establish communication norms around … research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Genomic basis for the unique phenotype of the alkaliphilic purple nonsulfur bacterium Rhodobaca bogoriensis
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify …
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Publications
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …
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DOE Metrics
…     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … available hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … It kind of looks like a sock puppet of a Yeti with a large purple lollipop attached to its mouth. We’ll have to put a …
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Environmental Genomics Group
… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… Minerals and Materials proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … proposal.  Submit research proposals  here that integrate genomics with nanoscale science, accelerating discoveries … capabilities, they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of …
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