FY2005 Sequencing for the
DOE Microbial Genome Program
For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce.
Strains of Shewanella
| Organism |
Est. Genome Size |
| Shewanella baltica OS195 |
5 Mb |
| Shewanella sp. ANA-3 |
5 Mb |
| Shewanella sp. MR-4 |
5 Mb |
| Shewanella sp. MR-7 |
5 Mb |
| Shewanella sp. W3-18-1 |
5 Mb |
| Shewanella baltica OS223 |
5 Mb |
Strains of Chloroflexi
| Organism |
Est. Genome Size |
| Chloroflexus aggregans DSM 9485 |
5 Mb |
| Chloroflexus sp. Y-396-1 |
5 Mb |
| Chlorothrix halophila (Candidatus) |
5 Mb |
| Herpetosiphon aurantiacus DSM 785 |
5 Mb |
| Roseiflexus castenholzii HLO8 |
5 Mb |
| Roseiflexus sp. strain RS-1 |
5 Mb |
| Chloroflexus sp. Y-400-fl |
|
Strains of Rhodopseudomonas palustris
| Organism |
Est. Genome Size |
| R. palustris BisA53 |
5.5 Mb |
| R. palustris BisB5 |
4.9 Mb |
| R. palustris BisB18 |
5.5 Mb |
| R. palustris HaA2 |
5.5 Mb |
Organisms Involved in Microbial Arsenic Transformation
| Organism |
Est. Genome Size |
| Bacillus selenitireducens MLS-10 |
2-4 Mb |
| Mono Lake Deltaproteobacter MLMS-1 |
6.06 Mb |
| Alkaliphilus oremlandii OhILAs |
2-4 Mb |
| Alkalilimnicola ehrlichei MLHE-1 |
2-4 Mb |
Two species of Micromonas pusilla
| Organism |
Est. Genome Size |
| M. pusilla NOUM17(RCC 299) |
15 Mb |
| M. pusilla CCMP1545 |
15 Mb |
Single microbes
| Organism |
Est. Genome Size |
| Acidiphilium cryptum JF-5 |
2.46 Mb |
| Acidobacteria bacterium Ellin 345 |
3 Mb |
| Acidothermus cellulolyticus 11B |
6 Mb |
| Actinobacillus succinogenes 130Z |
2 Mb |
| Aspergillus niger |
32 Mb |
| Aureococcus anophagefferens |
32 Mb |
| Bradyrhizobium sp. BTAi1 |
9.2 Mb |
| Burkholderia cepacia AMMD |
7.2 Mb |
| Caldicellulosiruptor saccharolyticus DSM 8903 |
4.3 Mb |
| Candidatus Ruthia magnifica Cm (Proteobacterial symbiont of the clam Calyptogena magnifica) |
4 Mb |
| Dehalococcoides sp. BAV1 |
2 Mb |
| Dehalococcoides sp. VS |
1.5 Mb |
| Desulfotomaculum reducens MI-1 |
4 Mb |
| Flavobacterium johnsoniae UW101 |
6.07 Mb |
| Geobacter sp. FRC-32 |
5 Mb |
| Halorhodospira halophila SL1 |
4 Mb |
| Methanosaeta thermophila PT |
3 Mb |
| Mycobacterium gilvum PYR-GCK |
5 Mb |
| Mycobacterium vanbaalenii PYR-1 |
6.46 Mb |
| Nectria haematococca MPVI |
40 Mb |
| Polaromonas naphthalenivorans CJ2 |
6 Mb |
| Postia Placenta |
40 Mb |
| Pseudoalteromonas atlantica T6c |
3.5 Mb |
| Pseudomonas putida F1 |
6.2 Mb |
| Psychromonas ingrahamii |
4 Mb |
| Xanthobacter autotrophicus Py2 |
5 Mb |
Communities
| Organism |
| Microbial Population from The Cedars (California) |
| Acid mine drainage community (Iron Mountain, California) |
| Obsidian Hot Spring (Yellowstone: Alicyclobacillus sp., Dictyoglomus turgidum, Geobacillus sp Y412MC61, Geobacillus sp. Y412MC52, Hydrogenobaculum strain Y04AAS1, Mixed Community, Sulfolobus solfataricus 98/2, Sulfurihydrogenibium sp. Y03AOP1, Thermareobacter sp. Y412MC57) |
| PAH Degrading Mycobacteria (Mycobacterium sp. MCS, JLS, and KMS |
| Active methylotroph community from Lake Washington |
