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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced … "Advanced Search" next to the search bar. Using the "Search Within" dropdown, select "Proposals". Search for your …
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Plant Program
… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … Gene Atlas initiative develops gene expression catalogs across JGI Plant Flagship speciesspecies, using deep-coverage … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Publications
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Cross-species functional diversity within the PIN auxin efflux protein family
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Natural Prodcast Episode 11: Marnix Medema
… after I submitted one of those big grants that — fingers crossed, tenure relying on this — antiSMASH version 1 comes … you to get a bird’s-eye perspective on the biosynthetic diversity element of these genomes. And you see how they’re– … family would be a set of gene clusters across different species, which all encode the production of either the same …
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Natural Prodcast Episode 16: Marcy Balunas
And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … able to produce chemistry that deals with reactive oxygen species and so potentially could go down that route.  DAN: … don’t transfer a lot of DNA back and forth, especially across species. And so then there isn’t horizontal transfer …
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FICUS
… applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an … they must utilize a broad range of the capabilities across at least two of the facilities, and generate datasets … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and … research experience "light" and... they're getting a publication at the end. " — Professor Matt Escobar,  CSU San …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate …
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Natural Prodcast Episode 22: Alison Narayan
… in my work, in genome mining, we have an awful lot of crossover, where us genome miners get really jazzed about … made it onto our list is because we wanted to have diversity. And so we wanted a profile across that protein … interesting. ALISON NARAYAN: It is a result that has a functional benefit for us, being chemists working with …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Yeah, bacteria sound like a good place, to me, to look for diversity because there are so many bacteria, because it is … from certain kinds of environments or certain kinds of species or whatever. So for example, if you wanted to go …
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Metagenome Program
… elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and … a snapshot of microbial diversity and their metabolic functional potential. This research enables us to better …
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