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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … maximize the impact of user research. The crucial elements are  proposal Award DOI(s), JGI’s ROR ID number, DOE … … Any external publication using JGI data that is not associated with a specific JGI proposal , and/or by authors …

… that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial … is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary … bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical … analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and …

… genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … to analyze metabolites in environmental organisms, communities, and samples including state-of-the-art … service returns a list of scored reaction and gene matches associated with metabolites and a list of scored metabolite …

… this time. Let’s jump right in. — DAN: So secondary metabolites. I kind of inferred through the stories I told you about geosmin, which is a bacterial sacred metabolite, and ergot alkaloids come from … Frankia . And so the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and …

… metabolites. So knowing, OK, which metabolites are actually associated with these gene clusters, or to activity? So if … Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And so yeah, we use antiSMASH to identify … of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: … IMG/M … Publications … Access to the microbial genomes and associated resources/tutorials is freely available, and any …

The SMAC is chartered by the Secondary Metabolites Program Head and report back to them. The Committee is chartered to render advice, guidance, and counsel on the effective …

… a check-up on me. And I wonder how that intersects with bacterial bioprospecting that is often done, where we’re … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your ethnobotany …

… organs that solely house– whose sole function is to house bacterial associates. And so the one that the Hawaiian … are those– they make chemistry! And so they – secondary metabolites, specialized metabolites, however we want to … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … doi: 10.1038/s41587-020-0718-6) The GEM catalog expands the bacterial and archaeal orders as seen on the phylogenetic … archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes that were …