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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE …

… cells that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The … possible roles in the environment, establish phylogenetic relationships and to provide valuable reference genomes in … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … families of genes that it searches for and uses a rule-based system that classifies the things that it finds into … expands the bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … from diverse bacterial and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function … the functional capability of microbial communities based on their metagenome sequence, in the context of …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To …

… projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range of disciplines. … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… to generate large datasets to explore sequence-function relationships, advancing the discovery of new biosensors for … aligning with the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on … descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as insights into clade-specific … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …