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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice …

… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … analysis. So they're getting research experience "light" and... they're getting a publication at the end. " — …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse …

… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … to metagenomics and metabolomics data, shedding light on microbial metabolism and activity in natural …

… and visualization of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Merck put out some software called DeepBGC , which is a machine learning tool that tries to look at patterns of Pfams …

… single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … is written into a Statement of Work document. … Shining a Light: Advanced Photon Source Capabilities for FICUS …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … made it possible to confidently assign species to nearly 326 genomes. Through the analysis of cliques, it has also …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …